Detailed information NTG1073172

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI514_RS29890
• Genome accession: NZ_CP173611
• Coordinates: 6688287..6689159 (-)
• Length: 290 a.a.
• NCBI ID: WP_160059460.1
• Uniprot ID: -
• Organism: Pseudomonas sp. M20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6683287..6694159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI514_RS29850 (ACI514_29840)	-	6683584..6684882 (-)	1299	WP_405122852.1	NAD(P)/FAD-dependent oxidoreductase	-
ACI514_RS29855 (ACI514_29845)	-	6684946..6685119 (-)	174	WP_007909875.1	DUF3094 domain-containing protein	-
ACI514_RS29860 (ACI514_29850)	-	6685171..6685698 (-)	528	WP_160059464.1	MOSC domain-containing protein	-
ACI514_RS29865 (ACI514_29855)	-	6685695..6686321 (-)	627	WP_007909887.1	DUF1780 domain-containing protein	-
ACI514_RS29870 (ACI514_29860)	-	6686494..6687183 (+)	690	WP_405122853.1	energy-coupling factor ABC transporter permease	-
ACI514_RS29875 (ACI514_29865)	-	6687249..6687464 (+)	216	WP_038369048.1	hypothetical protein	-
ACI514_RS29880 (ACI514_29870)	yacG	6687470..6687670 (-)	201	WP_160059462.1	DNA gyrase inhibitor YacG	-
ACI514_RS29885 (ACI514_29875)	coaE	6687667..6688290 (-)	624	WP_160059461.1	dephospho-CoA kinase	-
ACI514_RS29890 (ACI514_29880)	pilD	6688287..6689159 (-)	873	WP_160059460.1	A24 family peptidase	Machinery gene
ACI514_RS29895 (ACI514_29885)	pilC	6689161..6690378 (-)	1218	WP_160059459.1	type II secretion system F family protein	Machinery gene
ACI514_RS29900 (ACI514_29890)	pilB	6690381..6692081 (-)	1701	WP_405122854.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACI514_RS29905 (ACI514_29895)	-	6692307..6692729 (+)	423	WP_160059457.1	pilin	-
ACI514_RS29910 (ACI514_29900)	-	6693027..6693383 (+)	357	WP_405122855.1	BON domain-containing protein	-
ACI514_RS29915 (ACI514_29905)	-	6693655..6693951 (-)	297	WP_405122856.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32426.75 Da
• Isoelectric Point: 7.4001

>NTDB_id=1073172 ACI514_RS29890 WP_160059460.1 6688287..6689159(-) (pilD) [Pseudomonas sp. M20]
MPIEELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
PWENIPLLSYLWLRGRCSACTAPISKRYPLTELACGLLSAFIAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNEKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1073172 ACI514_RS29890 WP_160059460.1 6688287..6689159(-) (pilD) [Pseudomonas sp. M20]
ATGCCTATCGAAGAACTGTTCGCCCTGTATCCGCTGGCCTTTGTCTTCACCGCCCTGCTGCTGGGTCTGGTGGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCACGATGTGCTCGGTT
TGCCTGGTGAAACGCCGCTGCCCACTTACAACCTGATGCTGCCGCACTCCGAATGTCCGCATTGCGCCCACCGGATTCGC
CCGTGGGAAAACATTCCCCTGTTGAGTTACCTGTGGCTGCGCGGGCGCTGCTCTGCGTGTACCGCACCGATCAGCAAACG
TTATCCACTAACCGAACTGGCCTGTGGGTTGCTCTCGGCCTTCATCGCCTGGCACTTCGGTTTCGGTTGGCCGGCGTGCC
TGTTGATCGTCCTCACCTGGGGTTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTGTTGCCCGATGTGCTGGTA
CTGCCGTTGCTGTGGCTAGGGCTGATCGTCAACAGCTTCGGCTTGTTCGTGCCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCAGTATTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGCCACGGTGATT
TCAAGCTGCTGGCGTTGCTTGGAGCGTGGGGCGGCTGGCAGATTTTGCCGCTGACGATCCTGTTGTCATCGCTGGTCGGC
GCCATTATCGGGGTGATTTTGCTGCGCTTGCGTAATGAGAAAACCTCGACCCCCATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.674	97.241	0.541
pilD	Vibrio campbellii strain DS40M4	52.837	97.241	0.514
pilD	Acinetobacter baumannii D1279779	49.296	97.931	0.483
pilD	Acinetobacter nosocomialis M2	49.296	97.931	0.483
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448