Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI514_RS28715 Genome accession   NZ_CP173611
Coordinates   6440658..6441185 (+) Length   175 a.a.
NCBI ID   WP_127929967.1    Uniprot ID   A0A7Z2KY26
Organism   Pseudomonas sp. M20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6435658..6446185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI514_RS28700 (ACI514_28685) bfr 6435692..6436159 (+) 468 WP_007918444.1 bacterioferritin -
  ACI514_RS28705 (ACI514_28690) uvrA 6436225..6439059 (-) 2835 WP_160059618.1 excinuclease ABC subunit UvrA -
  ACI514_RS28710 (ACI514_28695) - 6439251..6440648 (+) 1398 WP_405122782.1 MFS transporter -
  ACI514_RS28715 (ACI514_28700) ssb 6440658..6441185 (+) 528 WP_127929967.1 single-stranded DNA-binding protein Machinery gene
  ACI514_RS28720 (ACI514_28705) - 6441304..6442461 (-) 1158 WP_160059616.1 glutathionylspermidine synthase family protein -
  ACI514_RS28725 (ACI514_28710) - 6442464..6443165 (-) 702 WP_405122783.1 DUF1190 domain-containing protein -
  ACI514_RS28730 (ACI514_28715) - 6443183..6443608 (-) 426 WP_160059614.1 DUF350 domain-containing protein -
  ACI514_RS28735 (ACI514_28720) - 6443624..6444274 (-) 651 WP_160059613.1 DUF2491 family protein -
  ACI514_RS28740 (ACI514_28725) - 6444489..6445187 (-) 699 WP_038362095.1 PspA/IM30 family protein -
  ACI514_RS28745 (ACI514_28730) - 6445205..6445873 (-) 669 WP_102901728.1 YjfI family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19329.47 Da        Isoelectric Point: 5.9314

>NTDB_id=1073168 ACI514_RS28715 WP_127929967.1 6440658..6441185(+) (ssb) [Pseudomonas sp. M20]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPSAPRQQAPRPQQSAPQQRSAPAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1073168 ACI514_RS28715 WP_127929967.1 6440658..6441185(+) (ssb) [Pseudomonas sp. M20]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATATCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGATCAACAAGGCGGTGGCAACAACTACCAGCAGTCGGCTCCATCTG
CGCCACGTCAGCAGGCTCCCCGTCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCCCCGGCTCCACAACAGGCCGCACCG
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2KY26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.606
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.531
  ssb Neisseria meningitidis MC58

47.778

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491

Multiple sequence alignment