Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI511_RS03775 Genome accession   NZ_CP173610
Coordinates   858885..859430 (-) Length   181 a.a.
NCBI ID   WP_103942327.1    Uniprot ID   -
Organism   Pectobacterium versatile strain M22b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 853885..864430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI511_RS03770 (ACI511_03775) - 857862..858143 (-) 282 WP_039490817.1 hypothetical protein -
  ACI511_RS03775 (ACI511_03780) ssb 858885..859430 (-) 546 WP_103942327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI511_RS03780 (ACI511_03785) uvrA 859681..862515 (+) 2835 WP_405077994.1 excinuclease ABC subunit UvrA -
  ACI511_RS03785 (ACI511_03790) - 862531..862950 (+) 420 WP_405077995.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI511_RS03790 (ACI511_03795) cas6f 863806..864360 (-) 555 WP_125233099.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19175.13 Da        Isoelectric Point: 5.2456

>NTDB_id=1073127 ACI511_RS03775 WP_103942327.1 858885..859430(-) (ssb) [Pectobacterium versatile strain M22b]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQSGGAPAGGGSAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1073127 ACI511_RS03775 WP_103942327.1 858885..859430(-) (ssb) [Pectobacterium versatile strain M22b]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGAGCGGCGGCGCACCAGCAGGCGGTGGCAGTGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.597
  ssb Neisseria meningitidis MC58

46.927

98.895

0.464
  ssb Neisseria gonorrhoeae MS11

46.927

98.895

0.464

Multiple sequence alignment