Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH44_RS16705 Genome accession   NZ_AP028908
Coordinates   3687248..3687793 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium araliae strain MAFF 302110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3682248..3692793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH44_RS16690 (PEC302110_32640) cas6f 3682737..3683291 (+) 555 WP_261847024.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  AACH44_RS16695 (PEC302110_32650) - 3683729..3684148 (-) 420 WP_039530888.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AACH44_RS16700 (PEC302110_32660) uvrA 3684164..3686998 (-) 2835 WP_261847025.1 excinuclease ABC subunit UvrA -
  AACH44_RS16705 (PEC302110_32680) ssb 3687248..3687793 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AACH44_RS16710 - 3688078..3688290 (+) 213 Protein_3264 ISAs1 family transposase -
  AACH44_RS16715 (PEC302110_32690) - 3688353..3689390 (-) 1038 WP_261847026.1 LacI family DNA-binding transcriptional regulator -
  AACH44_RS16720 (PEC302110_32700) - 3689390..3690442 (-) 1053 WP_261847027.1 carbohydrate ABC transporter permease -
  AACH44_RS16725 (PEC302110_32710) - 3690451..3691449 (-) 999 WP_261847028.1 sugar ABC transporter permease -
  AACH44_RS16730 (PEC302110_32720) ugpC 3691473..3692564 (-) 1092 WP_338659335.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=107287 AACH44_RS16705 WP_010295128.1 3687248..3687793(+) (ssb) [Pectobacterium araliae strain MAFF 302110]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=107287 AACH44_RS16705 WP_010295128.1 3687248..3687793(+) (ssb) [Pectobacterium araliae strain MAFF 302110]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGTGTAGAGCGTTACACCACCGAAGTGGTTGTTAACGTTGG
CGGCACCATGCAGATGCTAGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGACAGCAAC
AAGGCGGTTGGGGACAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGCCCTGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment