Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI3M8_RS19770 Genome accession   NZ_CP173546
Coordinates   3945631..3946167 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 98205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3944539..3969580 3945631..3946167 within 0
IS/Tn 3944999..3945457 3945631..3946167 flank 174


Gene organization within MGE regions


Location: 3944539..3969580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M8_RS19760 (ACI3M8_19745) yjcB 3944539..3944820 (+) 282 WP_001295689.1 YjcB family protein -
  ACI3M8_RS19765 (ACI3M8_19750) tnpA 3944999..3945457 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  ACI3M8_RS19770 (ACI3M8_19755) ssb 3945631..3946167 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI3M8_RS19775 (ACI3M8_19760) uvrA 3946422..3949244 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ACI3M8_RS19780 (ACI3M8_19765) yjbR 3949279..3949635 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACI3M8_RS19785 (ACI3M8_19770) yjbQ 3949639..3950055 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI3M8_RS19790 (ACI3M8_19775) aphA 3950166..3950879 (-) 714 WP_001226928.1 acid phosphatase AphA -
  ACI3M8_RS19795 (ACI3M8_19780) - 3951280..3951502 (+) 223 Protein_3767 hypothetical protein -
  ACI3M8_RS19800 (ACI3M8_19785) tyrB 3952005..3953198 (-) 1194 WP_001522223.1 aromatic amino acid transaminase -
  ACI3M8_RS19805 (ACI3M8_19790) alr 3953451..3954530 (-) 1080 WP_001147328.1 alanine racemase -
  ACI3M8_RS19810 (ACI3M8_19795) dnaB 3954583..3955998 (-) 1416 WP_000918363.1 replicative DNA helicase -
  ACI3M8_RS19815 (ACI3M8_19800) qorA 3956081..3957064 (+) 984 WP_021523324.1 quinone oxidoreductase -
  ACI3M8_RS19820 (ACI3M8_19805) pspG 3957230..3957472 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  ACI3M8_RS19825 (ACI3M8_19810) dusA 3957606..3958643 (-) 1038 WP_021523323.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACI3M8_RS19830 (ACI3M8_19815) - 3959006..3959962 (-) 957 WP_000014226.1 DUF2713 family protein -
  ACI3M8_RS19835 (ACI3M8_19820) zur 3960280..3960795 (+) 516 WP_000416263.1 zinc uptake transcriptional repressor Zur -
  ACI3M8_RS19840 (ACI3M8_19825) yjbJ 3960837..3961046 (-) 210 WP_001030593.1 CsbD family protein -
  ACI3M8_RS19845 (ACI3M8_19830) dinF 3961162..3962487 (-) 1326 WP_021523322.1 MATE family efflux transporter DinF -
  ACI3M8_RS19850 (ACI3M8_19835) lexA 3962560..3963168 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  ACI3M8_RS19855 (ACI3M8_19840) dgkA 3963278..3963646 (-) 369 WP_001522162.1 diacylglycerol kinase -
  ACI3M8_RS19860 (ACI3M8_19845) plsB 3963817..3966240 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  ACI3M8_RS19865 (ACI3M8_19850) ubiA 3966395..3967267 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  ACI3M8_RS19870 (ACI3M8_19855) ubiC 3967280..3967777 (-) 498 WP_001305723.1 chorismate lyase -
  ACI3M8_RS19875 (ACI3M8_19860) - 3968000..3969580 (-) 1581 WP_020233937.1 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1072847 ACI3M8_RS19770 WP_000168305.1 3945631..3946167(-) (ssb) [Escherichia coli strain 98205]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1072847 ACI3M8_RS19770 WP_000168305.1 3945631..3946167(-) (ssb) [Escherichia coli strain 98205]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment