Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI3M1_RS21740 Genome accession   NZ_CP173486
Coordinates   4455769..4456305 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 98219     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4443488..4479981 4455769..4456305 within 0


Gene organization within MGE regions


Location: 4443488..4479981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M1_RS21705 (ACI3M1_21705) yjcB 4443488..4443769 (+) 282 WP_001295689.1 YjcB family protein -
  ACI3M1_RS21710 (ACI3M1_21710) - 4444177..4444998 (+) 822 WP_001272932.1 abortive infection system antitoxin AbiGi family protein -
  ACI3M1_RS21715 (ACI3M1_21715) avs4 4445537..4450300 (-) 4764 WP_000240574.1 AVAST type 4 anti-phage nuclease Avs4 -
  ACI3M1_RS21720 (ACI3M1_21720) - 4450376..4450795 (-) 420 WP_001062122.1 hypothetical protein -
  ACI3M1_RS21725 (ACI3M1_21725) - 4450788..4452821 (-) 2034 WP_000807722.1 hypothetical protein -
  ACI3M1_RS21730 (ACI3M1_21730) - 4452838..4454376 (-) 1539 WP_001333349.1 site-specific integrase -
  ACI3M1_RS21735 (ACI3M1_21735) - 4454363..4455610 (-) 1248 WP_000414651.1 site-specific integrase -
  ACI3M1_RS21740 (ACI3M1_21740) ssb 4455769..4456305 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI3M1_RS21745 (ACI3M1_21745) uvrA 4456559..4459381 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ACI3M1_RS21750 (ACI3M1_21750) yjbR 4459416..4459772 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACI3M1_RS21755 (ACI3M1_21755) yjbQ 4459776..4460192 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI3M1_RS21760 (ACI3M1_21760) aphA 4460303..4461016 (-) 714 WP_001226928.1 acid phosphatase AphA -
  ACI3M1_RS21765 (ACI3M1_21765) yjbS 4461418..4461621 (+) 204 WP_001321562.1 protein YjbS -
  ACI3M1_RS21770 (ACI3M1_21770) tyrB 4462123..4463316 (-) 1194 WP_000486985.1 aromatic amino acid transaminase -
  ACI3M1_RS21775 (ACI3M1_21775) alr 4463569..4464648 (-) 1080 WP_001147328.1 alanine racemase -
  ACI3M1_RS21780 (ACI3M1_21780) dnaB 4464701..4466116 (-) 1416 WP_000918363.1 replicative DNA helicase -
  ACI3M1_RS21785 (ACI3M1_21785) qorA 4466199..4467182 (+) 984 WP_000235508.1 quinone oxidoreductase -
  ACI3M1_RS21790 (ACI3M1_21790) pspG 4467348..4467590 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  ACI3M1_RS21795 (ACI3M1_21795) dusA 4467724..4468761 (-) 1038 WP_001298868.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACI3M1_RS21800 (ACI3M1_21800) - 4469124..4470109 (-) 986 Protein_4266 DUF2713 domain-containing protein -
  ACI3M1_RS21805 (ACI3M1_21805) zur 4470427..4470942 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  ACI3M1_RS21810 (ACI3M1_21810) yjbJ 4470984..4471193 (-) 210 WP_001030593.1 CsbD family protein -
  ACI3M1_RS21815 (ACI3M1_21815) dinF 4471309..4472634 (-) 1326 WP_001326646.1 MATE family efflux transporter DinF -
  ACI3M1_RS21820 (ACI3M1_21820) lexA 4472707..4473315 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  ACI3M1_RS21825 (ACI3M1_21825) dgkA 4473425..4473793 (-) 369 WP_000002907.1 diacylglycerol kinase -
  ACI3M1_RS21830 (ACI3M1_21830) plsB 4473964..4476387 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  ACI3M1_RS21835 (ACI3M1_21835) ubiA 4476542..4477414 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  ACI3M1_RS21840 (ACI3M1_21840) ubiC 4477427..4477924 (-) 498 WP_001326644.1 chorismate lyase -
  ACI3M1_RS21845 (ACI3M1_21845) - 4478147..4479727 (-) 1581 Protein_4275 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1072632 ACI3M1_RS21740 WP_000168305.1 4455769..4456305(-) (ssb) [Escherichia coli strain 98219]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1072632 ACI3M1_RS21740 WP_000168305.1 4455769..4456305(-) (ssb) [Escherichia coli strain 98219]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment