Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RE428_RS04485 Genome accession   NZ_AP028878
Coordinates   974736..975269 (+) Length   177 a.a.
NCBI ID   WP_040882485.1    Uniprot ID   N6VQR0
Organism   Marinobacter nanhaiticus D15-8W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 969736..980269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE428_RS04470 (RE428_08970) - 971310..972227 (-) 918 WP_004580772.1 flagellar motor protein MotB -
  RE428_RS04475 (RE428_08980) pomA 972238..973011 (-) 774 WP_040882483.1 flagellar motor protein PomA -
  RE428_RS04480 (RE428_08990) - 973305..974663 (+) 1359 WP_004580774.1 MFS transporter -
  RE428_RS04485 (RE428_09000) ssb 974736..975269 (+) 534 WP_040882485.1 single-stranded DNA-binding protein Machinery gene
  RE428_RS04490 (RE428_09010) ntrC 975387..976820 (-) 1434 WP_004580776.1 nitrogen regulation protein NR(I) -
  RE428_RS04495 (RE428_09020) glnL 976817..977887 (-) 1071 WP_004580777.1 nitrogen regulation protein NR(II) -
  RE428_RS04500 (RE428_09030) - 978312..978857 (-) 546 WP_004580778.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19107.04 Da        Isoelectric Point: 4.9363

>NTDB_id=107250 RE428_RS04485 WP_040882485.1 974736..975269(+) (ssb) [Marinobacter nanhaiticus D15-8W]
MARGVNKVILIGNLGNDPETRYTPNGNAVTNLNLATDESYKDRQTGQMVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQGQDGQDRYTTEIVVDINGQMQMLDSRGAGGDNAGMNQGAPSRPQQQPAYGNQGQGGGSSGGYSQPPAQNQG
GGGMPEPVDDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=107250 RE428_RS04485 WP_040882485.1 974736..975269(+) (ssb) [Marinobacter nanhaiticus D15-8W]
ATGGCAAGAGGCGTAAACAAGGTCATCCTGATCGGTAACCTGGGCAACGATCCGGAAACCCGCTACACCCCTAACGGCAA
CGCCGTCACCAACCTGAACCTGGCGACGGACGAAAGTTACAAGGATCGTCAGACTGGCCAGATGGTGCCCAAGACCGAGT
GGCACCGCGTGGTCATGTTCGGCAAGATCGCCGAGGTCGCAGGACAATACCTGCGGAAGGGCTCCAAGGTCTACATCGAG
GGTAAGCTACAGACCCGAAAGTGGCAGGGGCAGGACGGTCAGGATCGTTACACCACCGAAATCGTAGTGGACATCAACGG
CCAGATGCAGATGCTCGACAGCCGCGGTGCCGGTGGCGACAACGCCGGCATGAATCAAGGGGCGCCATCCAGGCCTCAAC
AGCAGCCGGCCTACGGTAACCAGGGCCAGGGAGGCGGATCCTCAGGCGGTTACAGCCAGCCGCCGGCCCAGAACCAGGGC
GGCGGTGGTATGCCCGAGCCGGTCGACGACTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6VQR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.599
  ssb Vibrio cholerae strain A1552

55.978

100

0.582
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.475
  ssb Neisseria meningitidis MC58

45.556

100

0.463

Multiple sequence alignment