Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACI3L7_RS01900 Genome accession   NZ_CP173387
Coordinates   402655..403299 (+) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 397655..408299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS01885 (ACI3L7_01885) - 398108..399556 (-) 1449 WP_050905606.1 MSHA biogenesis protein MshI -
  ACI3L7_RS01890 (ACI3L7_01890) csrD 399568..401577 (-) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  ACI3L7_RS01895 (ACI3L7_01895) ssb 401825..402361 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  ACI3L7_RS01900 (ACI3L7_01900) qstR 402655..403299 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACI3L7_RS01905 (ACI3L7_01905) galU 403464..404336 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACI3L7_RS01910 (ACI3L7_01910) uvrA 404475..407297 (+) 2823 WP_394158161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=1071911 ACI3L7_RS01900 WP_005432827.1 402655..403299(+) (qstR) [Vibrio campbellii strain LB135]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1071911 ACI3L7_RS01900 WP_005432827.1 402655..403299(+) (qstR) [Vibrio campbellii strain LB135]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCTACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACAGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment