Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACI3L9_RS06690 Genome accession   NZ_CP173385
Coordinates   1481644..1482288 (+) Length   214 a.a.
NCBI ID   WP_079402760.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476644..1487288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS06675 (ACI3L9_06675) - 1477097..1478545 (-) 1449 WP_079402759.1 MSHA biogenesis protein MshI -
  ACI3L9_RS06680 (ACI3L9_06680) csrD 1478557..1480566 (-) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  ACI3L9_RS06685 (ACI3L9_06685) ssb 1480814..1481350 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  ACI3L9_RS06690 (ACI3L9_06690) qstR 1481644..1482288 (+) 645 WP_079402760.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACI3L9_RS06695 (ACI3L9_06695) galU 1482453..1483325 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACI3L9_RS06700 (ACI3L9_06700) uvrA 1483464..1486286 (+) 2823 WP_079402761.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24547.47 Da        Isoelectric Point: 8.0591

>NTDB_id=1071864 ACI3L9_RS06690 WP_079402760.1 1481644..1482288(+) (qstR) [Vibrio campbellii strain LB198]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISPQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1071864 ACI3L9_RS06690 WP_079402760.1 1481644..1482288(+) (qstR) [Vibrio campbellii strain LB198]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGCCCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment