Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACI3L6_RS04545 Genome accession   NZ_CP173383
Coordinates   1014200..1014787 (+) Length   195 a.a.
NCBI ID   WP_005428539.1    Uniprot ID   A0AAQ2XWF3
Organism   Vibrio campbellii strain LB314     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009200..1019787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS04525 (ACI3L6_04525) panP 1009406..1011052 (-) 1647 WP_079401243.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ACI3L6_RS04530 (ACI3L6_04530) - 1011174..1011686 (-) 513 WP_038891356.1 hypothetical protein -
  ACI3L6_RS04535 (ACI3L6_04535) - 1011896..1012801 (-) 906 WP_079401244.1 lysine exporter LysO family protein -
  ACI3L6_RS04540 (ACI3L6_04540) - 1012909..1013829 (-) 921 WP_005428540.1 HDOD domain-containing protein -
  ACI3L6_RS04545 (ACI3L6_04545) tfoX 1014200..1014787 (+) 588 WP_005428539.1 TfoX/Sxy family DNA transformation protein Regulator
  ACI3L6_RS04550 (ACI3L6_04550) - 1015000..1015548 (-) 549 WP_005428519.1 hypothetical protein -
  ACI3L6_RS04555 (ACI3L6_04555) - 1015756..1016253 (-) 498 WP_005428532.1 response regulator -
  ACI3L6_RS04560 (ACI3L6_04560) - 1016250..1018190 (-) 1941 WP_079401245.1 ATP-binding protein -
  ACI3L6_RS04565 (ACI3L6_04565) - 1018376..1019638 (+) 1263 WP_079401246.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22337.57 Da        Isoelectric Point: 6.4656

>NTDB_id=1071807 ACI3L6_RS04545 WP_005428539.1 1014200..1014787(+) (tfoX) [Vibrio campbellii strain LB314]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1071807 ACI3L6_RS04545 WP_005428539.1 1014200..1014787(+) (tfoX) [Vibrio campbellii strain LB314]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGCGGTAT
TGGTTTATTCAGCAACGACGCAATGTTTGCTCTGGTAAGTAACGACTGCTGTTACTTGCGTGGTGGCAATGGCCTCGATG
AAGAGTTCACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTATTACGATGTA
ACAGAATTGTTCGATTCCGGTTTTGCTGGGTTGGATGAGCTGCTACAAAAATCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CGGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAACAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTGAAGCTGCTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAACCACGCAA
GAAGCAGCTACTGGCTATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

100

100

1
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579

Multiple sequence alignment