Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACIX3D_RS04665 | Genome accession | NZ_CP173318 |
| Coordinates | 1031783..1032229 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain APL2210214E | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1026783..1037229
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIX3D_RS04640 (ACIX3D_04645) | yacG | 1027690..1027878 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| ACIX3D_RS04645 (ACIX3D_04650) | coaE | 1027860..1028498 (-) | 639 | WP_005597390.1 | dephospho-CoA kinase | - |
| ACIX3D_RS04650 (ACIX3D_04655) | - | 1028520..1029158 (-) | 639 | WP_005597392.1 | prepilin peptidase | - |
| ACIX3D_RS04655 (ACIX3D_04660) | pilC | 1029185..1030387 (-) | 1203 | WP_005597394.1 | type II secretion system F family protein | Machinery gene |
| ACIX3D_RS04660 (ACIX3D_04665) | pilB | 1030371..1031765 (-) | 1395 | WP_117374128.1 | GspE/PulE family protein | Machinery gene |
| ACIX3D_RS04665 (ACIX3D_04670) | pilA | 1031783..1032229 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACIX3D_RS04670 (ACIX3D_04675) | radA | 1032411..1033790 (+) | 1380 | WP_005597398.1 | DNA repair protein RadA | - |
| ACIX3D_RS04675 (ACIX3D_04680) | - | 1033834..1034067 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| ACIX3D_RS04680 (ACIX3D_04685) | folA | 1034194..1034682 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| ACIX3D_RS04685 (ACIX3D_04690) | proB | 1034769..1035860 (+) | 1092 | WP_005597401.1 | glutamate 5-kinase | - |
| ACIX3D_RS04690 (ACIX3D_04695) | - | 1035873..1036649 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=1071517 ACIX3D_RS04665 WP_005597397.1 1031783..1032229(-) (pilA) [Actinobacillus pleuropneumoniae strain APL2210214E]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=1071517 ACIX3D_RS04665 WP_005597397.1 1031783..1032229(-) (pilA) [Actinobacillus pleuropneumoniae strain APL2210214E]
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |