Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | ACIRXM_RS00340 | Genome accession | NZ_CP173234 |
| Coordinates | 69694..70050 (+) | Length | 118 a.a. |
| NCBI ID | WP_017805052.1 | Uniprot ID | A0A0F5EZA2 |
| Organism | Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 64694..75050
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIRXM_RS00325 (ACIRXM_00330) | - | 65560..66828 (-) | 1269 | WP_264246734.1 | AmpG family muropeptide MFS transporter | - |
| ACIRXM_RS00330 (ACIRXM_00335) | galE | 66895..67911 (-) | 1017 | WP_264245675.1 | UDP-glucose 4-epimerase GalE | - |
| ACIRXM_RS00335 (ACIRXM_00340) | - | 68118..69431 (+) | 1314 | WP_110479111.1 | NCS2 family permease | - |
| ACIRXM_RS00340 (ACIRXM_00345) | comE1/comEA | 69694..70050 (+) | 357 | WP_017805052.1 | ComEA family DNA-binding protein | Machinery gene |
| ACIRXM_RS00345 (ACIRXM_00350) | rdgB | 70189..70785 (+) | 597 | WP_410686711.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ACIRXM_RS00350 (ACIRXM_00355) | hemW | 70785..71939 (+) | 1155 | WP_046098006.1 | radical SAM family heme chaperone HemW | - |
| ACIRXM_RS00355 (ACIRXM_00360) | luxS | 72007..72513 (-) | 507 | WP_035685396.1 | S-ribosylhomocysteine lyase | - |
| ACIRXM_RS00360 (ACIRXM_00365) | - | 72736..73194 (-) | 459 | WP_410686713.1 | YqaA family protein | - |
| ACIRXM_RS00365 (ACIRXM_00370) | - | 73187..73795 (-) | 609 | WP_410686715.1 | sugar O-acetyltransferase | - |
| ACIRXM_RS00370 (ACIRXM_00375) | - | 73796..74398 (-) | 603 | WP_410686717.1 | beta-phosphoglucomutase family hydrolase | - |
| ACIRXM_RS00375 (ACIRXM_00380) | - | 74541..74918 (+) | 378 | WP_017805060.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 12840.71 Da Isoelectric Point: 7.0137
>NTDB_id=1071058 ACIRXM_RS00340 WP_017805052.1 69694..70050(+) (comE1/comEA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ
Nucleotide
Download Length: 357 bp
>NTDB_id=1071058 ACIRXM_RS00340 WP_017805052.1 69694..70050(+) (comE1/comEA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.679 |
94.915 |
0.5 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50 |
89.831 |
0.449 |
| comEA | Vibrio cholerae C6706 |
41.441 |
94.068 |
0.39 |
| comEA | Vibrio cholerae strain A1552 |
41.441 |
94.068 |
0.39 |