Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACIO08_RS09315 Genome accession   NZ_CP173233
Coordinates   1901252..1901608 (-) Length   118 a.a.
NCBI ID   WP_410678080.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896252..1906608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS09280 (ACIO08_09280) - 1896385..1896762 (-) 378 WP_017805060.1 hypothetical protein -
  ACIO08_RS09285 (ACIO08_09285) - 1896905..1897507 (+) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  ACIO08_RS09290 (ACIO08_09290) - 1897508..1898116 (+) 609 WP_017805058.1 sugar O-acetyltransferase -
  ACIO08_RS09295 (ACIO08_09295) - 1898109..1898567 (+) 459 WP_410678075.1 YqaA family protein -
  ACIO08_RS09300 (ACIO08_09300) luxS 1898790..1899296 (+) 507 WP_410678076.1 S-ribosylhomocysteine lyase -
  ACIO08_RS09305 (ACIO08_09305) hemW 1899364..1900518 (-) 1155 WP_410678077.1 radical SAM family heme chaperone HemW -
  ACIO08_RS09310 (ACIO08_09310) rdgB 1900518..1901114 (-) 597 WP_410678079.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACIO08_RS09315 (ACIO08_09315) comE1/comEA 1901252..1901608 (-) 357 WP_410678080.1 ComEA family DNA-binding protein Machinery gene
  ACIO08_RS09320 (ACIO08_09320) - 1901871..1903184 (-) 1314 WP_410678081.1 NCS2 family permease -
  ACIO08_RS09325 (ACIO08_09325) galE 1903388..1904404 (+) 1017 WP_410678082.1 UDP-glucose 4-epimerase GalE -
  ACIO08_RS09330 (ACIO08_09330) - 1904468..1905736 (+) 1269 WP_410679356.1 AmpG family muropeptide MFS transporter -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12810.68 Da        Isoelectric Point: 7.0137

>NTDB_id=1071052 ACIO08_RS09315 WP_410678080.1 1901252..1901608(-) (comE1/comEA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVADNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1071052 ACIO08_RS09315 WP_410678080.1 1901252..1901608(-) (comE1/comEA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGGCGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

52.679

94.915

0.5
  comEA/comE1 Glaesserella parasuis strain SC1401

50.943

89.831

0.458
  comEA Vibrio cholerae C6706

41.441

94.068

0.39
  comEA Vibrio cholerae strain A1552

41.441

94.068

0.39

Multiple sequence alignment