Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | ACIO03_RS09550 | Genome accession | NZ_CP173231 |
| Coordinates | 1960908..1961264 (-) | Length | 118 a.a. |
| NCBI ID | WP_410678080.1 | Uniprot ID | - |
| Organism | Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1955908..1966264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIO03_RS09515 (ACIO03_09515) | - | 1956041..1956418 (-) | 378 | WP_017805060.1 | hypothetical protein | - |
| ACIO03_RS09520 (ACIO03_09520) | - | 1956561..1957163 (+) | 603 | WP_035685401.1 | beta-phosphoglucomutase family hydrolase | - |
| ACIO03_RS09525 (ACIO03_09525) | - | 1957164..1957772 (+) | 609 | WP_017805058.1 | sugar O-acetyltransferase | - |
| ACIO03_RS09530 (ACIO03_09530) | - | 1957765..1958223 (+) | 459 | WP_410678075.1 | YqaA family protein | - |
| ACIO03_RS09535 (ACIO03_09535) | luxS | 1958446..1958952 (+) | 507 | WP_410678076.1 | S-ribosylhomocysteine lyase | - |
| ACIO03_RS09540 (ACIO03_09540) | hemW | 1959020..1960174 (-) | 1155 | WP_410678077.1 | radical SAM family heme chaperone HemW | - |
| ACIO03_RS09545 (ACIO03_09545) | rdgB | 1960174..1960770 (-) | 597 | WP_410678079.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ACIO03_RS09550 (ACIO03_09550) | comE1/comEA | 1960908..1961264 (-) | 357 | WP_410678080.1 | ComEA family DNA-binding protein | Machinery gene |
| ACIO03_RS09555 (ACIO03_09555) | - | 1961527..1962840 (-) | 1314 | WP_410678081.1 | NCS2 family permease | - |
| ACIO03_RS09560 (ACIO03_09560) | galE | 1963044..1964060 (+) | 1017 | WP_410678082.1 | UDP-glucose 4-epimerase GalE | - |
| ACIO03_RS09565 (ACIO03_09565) | - | 1964124..1965392 (+) | 1269 | WP_410679356.1 | AmpG family muropeptide MFS transporter | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 12810.68 Da Isoelectric Point: 7.0137
>NTDB_id=1070999 ACIO03_RS09550 WP_410678080.1 1960908..1961264(-) (comE1/comEA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVADNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ
MKIKTILSSLILAITFIGSVYADETVNPPATTQVADNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ
Nucleotide
Download Length: 357 bp
>NTDB_id=1070999 ACIO03_RS09550 WP_410678080.1 1960908..1961264(-) (comE1/comEA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGGCGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGGCGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.679 |
94.915 |
0.5 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.943 |
89.831 |
0.458 |
| comEA | Vibrio cholerae C6706 |
41.441 |
94.068 |
0.39 |
| comEA | Vibrio cholerae strain A1552 |
41.441 |
94.068 |
0.39 |