Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACIO06_RS04180 Genome accession   NZ_CP173230
Coordinates   874073..874429 (+) Length   118 a.a.
NCBI ID   WP_035685388.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 869073..879429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO06_RS04160 (ACIO06_04160) - 869940..871208 (-) 1269 WP_264246734.1 AmpG family muropeptide MFS transporter -
  ACIO06_RS04165 (ACIO06_04165) galE 871275..872291 (-) 1017 WP_410680736.1 UDP-glucose 4-epimerase GalE -
  ACIO06_RS04170 (ACIO06_04170) - 872327..872467 (-) 141 WP_156127777.1 hypothetical protein -
  ACIO06_RS04175 (ACIO06_04175) - 872498..873811 (+) 1314 WP_410680737.1 NCS2 family permease -
  ACIO06_RS04180 (ACIO06_04180) comE1/comEA 874073..874429 (+) 357 WP_035685388.1 ComEA family DNA-binding protein Machinery gene
  ACIO06_RS04185 (ACIO06_04185) rdgB 874567..875163 (+) 597 WP_017805053.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACIO06_RS04190 (ACIO06_04190) hemW 875163..876317 (+) 1155 WP_410680738.1 radical SAM family heme chaperone HemW -
  ACIO06_RS04195 (ACIO06_04195) luxS 876385..876891 (-) 507 WP_410680739.1 S-ribosylhomocysteine lyase -
  ACIO06_RS04200 (ACIO06_04200) - 877114..877572 (-) 459 WP_410680740.1 YqaA family protein -
  ACIO06_RS04205 (ACIO06_04205) - 877565..878173 (-) 609 WP_035685399.1 sugar O-acetyltransferase -
  ACIO06_RS04210 (ACIO06_04210) - 878174..878776 (-) 603 WP_017805059.1 beta-phosphoglucomutase family hydrolase -
  ACIO06_RS04215 (ACIO06_04215) - 878919..879296 (+) 378 WP_110479105.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12796.70 Da        Isoelectric Point: 8.4831

>NTDB_id=1070954 ACIO06_RS04180 WP_035685388.1 874073..874429(+) (comE1/comEA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIATTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1070954 ACIO06_RS04180 WP_035685388.1 874073..874429(+) (comE1/comEA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGCCACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAAAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGAATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

53.571

94.915

0.508
  comEA/comE1 Glaesserella parasuis strain SC1401

50

89.831

0.449
  comEA Vibrio cholerae C6706

41.441

94.068

0.39
  comEA Vibrio cholerae strain A1552

41.441

94.068

0.39

Multiple sequence alignment