Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | ACIO04_RS03885 | Genome accession | NZ_CP173229 |
| Coordinates | 818206..818562 (+) | Length | 118 a.a. |
| NCBI ID | WP_035685388.1 | Uniprot ID | - |
| Organism | Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 813206..823562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIO04_RS03865 (ACIO04_03865) | - | 814073..815341 (-) | 1269 | WP_264246734.1 | AmpG family muropeptide MFS transporter | - |
| ACIO04_RS03870 (ACIO04_03870) | galE | 815408..816424 (-) | 1017 | WP_410680736.1 | UDP-glucose 4-epimerase GalE | - |
| ACIO04_RS03875 (ACIO04_03875) | - | 816460..816600 (-) | 141 | WP_156127777.1 | hypothetical protein | - |
| ACIO04_RS03880 (ACIO04_03880) | - | 816631..817944 (+) | 1314 | WP_410680737.1 | NCS2 family permease | - |
| ACIO04_RS03885 (ACIO04_03885) | comE1/comEA | 818206..818562 (+) | 357 | WP_035685388.1 | ComEA family DNA-binding protein | Machinery gene |
| ACIO04_RS03890 (ACIO04_03890) | rdgB | 818700..819296 (+) | 597 | WP_017805053.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ACIO04_RS03895 (ACIO04_03895) | hemW | 819296..820450 (+) | 1155 | WP_410680738.1 | radical SAM family heme chaperone HemW | - |
| ACIO04_RS03900 (ACIO04_03900) | luxS | 820518..821024 (-) | 507 | WP_410680739.1 | S-ribosylhomocysteine lyase | - |
| ACIO04_RS03905 (ACIO04_03905) | - | 821247..821705 (-) | 459 | WP_410680740.1 | YqaA family protein | - |
| ACIO04_RS03910 (ACIO04_03910) | - | 821698..822306 (-) | 609 | WP_035685399.1 | sugar O-acetyltransferase | - |
| ACIO04_RS03915 (ACIO04_03915) | - | 822307..822909 (-) | 603 | WP_017805059.1 | beta-phosphoglucomutase family hydrolase | - |
| ACIO04_RS03920 (ACIO04_03920) | - | 823052..823429 (+) | 378 | WP_110479105.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 12796.70 Da Isoelectric Point: 8.4831
>NTDB_id=1070926 ACIO04_RS03885 WP_035685388.1 818206..818562(+) (comE1/comEA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIATTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIATTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ
Nucleotide
Download Length: 357 bp
>NTDB_id=1070926 ACIO04_RS03885 WP_035685388.1 818206..818562(+) (comE1/comEA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGCCACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAAAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGAATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGCCACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAAAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGAATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
53.571 |
94.915 |
0.508 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50 |
89.831 |
0.449 |
| comEA | Vibrio cholerae C6706 |
41.441 |
94.068 |
0.39 |
| comEA | Vibrio cholerae strain A1552 |
41.441 |
94.068 |
0.39 |