Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABWL43_RS17070 Genome accession   NZ_CP173217
Coordinates   3720621..3722846 (-) Length   741 a.a.
NCBI ID   WP_404483236.1    Uniprot ID   -
Organism   Pseudomonas sp. HT11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3715621..3727846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWL43_RS17035 (ABWL43_17035) murB 3715990..3717009 (-) 1020 WP_369303011.1 UDP-N-acetylmuramate dehydrogenase -
  ABWL43_RS17040 (ABWL43_17040) - 3717006..3717470 (-) 465 WP_242199496.1 low molecular weight protein-tyrosine-phosphatase -
  ABWL43_RS17045 (ABWL43_17045) kdsB 3717470..3718234 (-) 765 WP_145164751.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABWL43_RS17050 (ABWL43_17050) - 3718231..3718416 (-) 186 WP_003174668.1 Trm112 family protein -
  ABWL43_RS17055 (ABWL43_17055) lpxK 3718441..3719451 (-) 1011 WP_262207330.1 tetraacyldisaccharide 4'-kinase -
  ABWL43_RS17060 (ABWL43_17060) - 3719451..3719879 (-) 429 WP_106579831.1 biopolymer transporter ExbD -
  ABWL43_RS17065 (ABWL43_17065) exbB 3719876..3720511 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABWL43_RS17070 (ABWL43_17070) comA 3720621..3722846 (-) 2226 WP_404483236.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABWL43_RS17075 (ABWL43_17075) - 3722982..3723497 (+) 516 WP_404483238.1 DUF2062 domain-containing protein -
  ABWL43_RS17080 (ABWL43_17080) - 3723501..3724859 (-) 1359 WP_404488442.1 histidine kinase sensor domain-containing protein -
  ABWL43_RS17085 (ABWL43_17085) - 3724846..3725571 (-) 726 WP_404483240.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80234.99 Da        Isoelectric Point: 10.4179

>NTDB_id=1070637 ABWL43_RS17070 WP_404483236.1 3720621..3722846(-) (comA) [Pseudomonas sp. HT11]
MKIGMFALGLGLLSLRLLPALPPTGWLLAIWVIALMLLPFRTYPVAFFLFGLGWACLSAQWALDDRLKPALDGQTRWVEG
RVTGLPQQTSTGVRFELTDSRSRTARLPKRIRVSWHGGPPVKSGERWRLAITLRRPAGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLTPARNAWRDAVRQHLAAVDAQGREAGLAALVLGDGSGLAARDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARHGCWPRALPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALDAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSLWHAWTRPQWLIAIGLFPLLLVLGLPVSLSAPVANLFAVPWISLVVLPLAL
LGTALLAIPFVGESLLWLAGGALDGLFRGLTLLASQQPAWIPAEVPLVYWCVSLAGAVLLLLPQGLPFRLLGWPMLLLAV
FPPRQPVPFGQVDVVQLDVGQGQALILRTRHHTLLYDAGPRSGEFDLGARVVLPALKKLGVDTLDLLVISHAHADHAGGA
PAVAQGLAVQRVIGGETQGLPALLDTQPCVSGEQWEWDGVAFELWQWPGATSSNPKSCVLGVKANGERLLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSWPLLEQLVPKSVLISRGRGNAFGHPHPQVLARYQASGSRVYDSAEQGAVRVQL
GAFEPPEVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1070637 ABWL43_RS17070 WP_404483236.1 3720621..3722846(-) (comA) [Pseudomonas sp. HT11]
ATGAAAATCGGCATGTTTGCGCTCGGACTTGGCCTGCTTTCGTTGCGACTTTTACCCGCACTGCCGCCTACCGGATGGCT
ACTGGCCATTTGGGTGATTGCGTTGATGTTGTTGCCTTTTCGCACCTATCCGGTGGCCTTTTTCCTGTTCGGATTGGGCT
GGGCGTGCCTGAGCGCGCAGTGGGCCTTGGACGACCGTCTGAAGCCGGCGCTGGATGGCCAGACGCGTTGGGTAGAAGGC
CGCGTGACCGGGCTGCCGCAGCAGACAAGCACTGGCGTACGGTTTGAACTGACCGACAGCCGGTCACGCACAGCCCGCTT
ACCCAAGCGCATTCGGGTGTCCTGGCACGGTGGCCCGCCAGTAAAGAGTGGTGAGCGTTGGCGCCTGGCGATCACCTTGA
GGCGGCCCGCGGGGCTGCTCAATTTTCACGGTTTTGACCACGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGA
TCGGTCAAGGACGGCCAGCGCCTGACGCCAGCCCGCAATGCCTGGCGCGATGCTGTCCGGCAACACTTGGCGGCGGTGGA
CGCCCAAGGGCGCGAGGCGGGTTTGGCGGCGCTGGTGTTGGGCGATGGCTCTGGGCTGGCTGCCAGGGACTGGCAGGTAT
TGCAGGACACCGGAACCGTGCACCTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTGGCGGGGTTGATCTACGGCCTG
GTGGCCGGGCTTGCGCGCCACGGCTGTTGGCCGCGAGCCTTGCCGTGGCTGCCATGGGCGTGTGGCCTGGCGTTTGCCGC
CGCGCTGGGTTACGGCCTGTTGGCTGGGTTTGGTGTGCCGGTACAACGCGCCTGTGTGATGGTCGGCCTGGTATTGCTGT
GGCGTCTGCGTTTCCGGCATTTGGGGATCTGGTGGCCACTGTTGTTGGCGCTCGACGCCGTGCTGGTGCTGGAACCGTTG
GCGAGTTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCCGTCGCGGTGCTGGTACTGGCGTTCAGCGGGCGCCTGGGCCC
ATGGAGTCTGTGGCACGCATGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTGTTTCCGCTCCTGCTGGTGCTTGGCT
TGCCTGTAAGCCTGAGTGCGCCAGTGGCCAATCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTATTGCCATTGGCCCTA
CTGGGGACTGCGCTGCTGGCGATTCCGTTTGTGGGTGAAAGCTTGCTGTGGTTGGCCGGCGGCGCACTTGATGGGCTTTT
CAGAGGGCTGACGCTGCTGGCGAGCCAGCAGCCGGCCTGGATACCGGCCGAGGTGCCCTTGGTGTATTGGTGTGTAAGCC
TGGCGGGCGCGGTGTTGTTGCTGCTGCCCCAAGGCCTGCCGTTTCGGCTGCTGGGCTGGCCAATGCTGTTGCTGGCGGTC
TTTCCACCCAGGCAGCCCGTGCCTTTTGGGCAGGTGGACGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCGCTGATCCT
GCGCACGCGCCATCACACCTTGCTTTACGATGCGGGGCCGCGTTCCGGCGAGTTTGATCTTGGCGCGCGCGTGGTGCTGC
CCGCGTTGAAAAAACTCGGGGTCGACACCCTGGACCTGCTGGTGATCAGCCATGCTCACGCGGATCACGCGGGCGGTGCG
CCAGCCGTTGCCCAGGGGCTTGCAGTCCAGCGGGTGATCGGAGGAGAAACCCAAGGCTTGCCGGCATTGCTCGATACTCA
ACCCTGCGTCAGTGGCGAGCAGTGGGAGTGGGACGGTGTAGCGTTTGAACTGTGGCAGTGGCCTGGCGCCACTAGCAGCA
ACCCGAAATCCTGTGTGTTGGGTGTAAAGGCCAACGGCGAACGCCTGCTGTTGACCGGCGATATCGACCGCGCTGCCGAA
CGGGCTTTCCTCGCGTCCCCCCTGGCGGTACGGACCGATTGGCTGCAGGCGCCGCATCATGGCAGTCGCAGTTCTTCATC
CTGGCCCTTACTGGAACAGCTGGTGCCCAAATCGGTCCTGATCTCACGGGGGCGTGGCAACGCGTTCGGTCATCCGCACC
CGCAGGTGCTGGCGCGTTATCAGGCGTCGGGCAGTCGCGTGTACGACAGCGCCGAGCAAGGCGCCGTGCGTGTGCAATTG
GGCGCCTTTGAACCACCTGAAGTTGCTCGCAGTCAACGCCGCTTCTGGCGTGAGGCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.971

97.031

0.572
  comA Ralstonia pseudosolanacearum GMI1000

36.551

100

0.383

Multiple sequence alignment