Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABWL43_RS17065 Genome accession   NZ_CP173217
Coordinates   3719876..3720511 (-) Length   211 a.a.
NCBI ID   WP_106579832.1    Uniprot ID   A0A7M1KNP4
Organism   Pseudomonas sp. HT11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3714876..3725511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWL43_RS17030 (ABWL43_17030) - 3715256..3715927 (+) 672 WP_145164757.1 Bax inhibitor-1/YccA family protein -
  ABWL43_RS17035 (ABWL43_17035) murB 3715990..3717009 (-) 1020 WP_369303011.1 UDP-N-acetylmuramate dehydrogenase -
  ABWL43_RS17040 (ABWL43_17040) - 3717006..3717470 (-) 465 WP_242199496.1 low molecular weight protein-tyrosine-phosphatase -
  ABWL43_RS17045 (ABWL43_17045) kdsB 3717470..3718234 (-) 765 WP_145164751.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABWL43_RS17050 (ABWL43_17050) - 3718231..3718416 (-) 186 WP_003174668.1 Trm112 family protein -
  ABWL43_RS17055 (ABWL43_17055) lpxK 3718441..3719451 (-) 1011 WP_262207330.1 tetraacyldisaccharide 4'-kinase -
  ABWL43_RS17060 (ABWL43_17060) - 3719451..3719879 (-) 429 WP_106579831.1 biopolymer transporter ExbD -
  ABWL43_RS17065 (ABWL43_17065) exbB 3719876..3720511 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABWL43_RS17070 (ABWL43_17070) comA 3720621..3722846 (-) 2226 WP_404483236.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABWL43_RS17075 (ABWL43_17075) - 3722982..3723497 (+) 516 WP_404483238.1 DUF2062 domain-containing protein -
  ABWL43_RS17080 (ABWL43_17080) - 3723501..3724859 (-) 1359 WP_404488442.1 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8768

>NTDB_id=1070636 ABWL43_RS17065 WP_106579832.1 3719876..3720511(-) (exbB) [Pseudomonas sp. HT11]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1070636 ABWL43_RS17065 WP_106579832.1 3719876..3720511(-) (exbB) [Pseudomonas sp. HT11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCATCACGCCCGAGCATTTGCTGGGGCAGGTGTGGGGCTGGATCAAAAACA
AACAACTGGATAAAGACAAACTCAAGGAATTGCGCGCCAATTCCCCTTTGGGTGAAATCCTGGCTGCCGGCCTCGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCCGCCGCGCGGGTCATCCATGAGATGGAGCGCTATAT
CAATGCGCTGGGCACCATCGCGGCCATGGCGCCATTGCTCGGCCTGTTGGGTACGGTGTTGGGCATGATTGATATTTTCA
GCTCATTCATGGGCTCAGGCATGACCACTAATGCCGCGGTATTGGCAGGCGGTATCTCCAAGGCCCTGATTACTACGGCT
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTCGTGGTAGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTCGAGGGCCGGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834

Multiple sequence alignment