Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACIGXT_RS11980 Genome accession   NZ_CP173038
Coordinates   2475076..2475411 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Shannan.BV80-12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2470076..2480411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIGXT_RS11960 (ACIGXT_11960) gcvT 2470687..2471787 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  ACIGXT_RS11965 (ACIGXT_11965) - 2472210..2473880 (+) 1671 WP_058906183.1 DEAD/DEAH box helicase -
  ACIGXT_RS11970 (ACIGXT_11970) - 2473898..2474692 (+) 795 WP_003153106.1 YqhG family protein -
  ACIGXT_RS11975 (ACIGXT_11975) sinI 2474869..2475042 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACIGXT_RS11980 (ACIGXT_11980) sinR 2475076..2475411 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACIGXT_RS11985 (ACIGXT_11985) tasA 2475459..2476244 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACIGXT_RS11990 (ACIGXT_11990) sipW 2476308..2476892 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACIGXT_RS11995 (ACIGXT_11995) tapA 2476864..2477535 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  ACIGXT_RS12000 (ACIGXT_12000) - 2477795..2478124 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACIGXT_RS12005 (ACIGXT_12005) - 2478164..2478343 (-) 180 WP_003153093.1 YqzE family protein -
  ACIGXT_RS12010 (ACIGXT_12010) comGG 2478400..2478777 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACIGXT_RS12015 (ACIGXT_12015) comGF 2478778..2479173 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  ACIGXT_RS12020 (ACIGXT_12020) comGE 2479187..2479501 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACIGXT_RS12025 (ACIGXT_12025) comGD 2479485..2479922 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACIGXT_RS12030 (ACIGXT_12030) comGC 2479912..2480178 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1070119 ACIGXT_RS11980 WP_003153104.1 2475076..2475411(+) (sinR) [Bacillus velezensis strain Shannan.BV80-12]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1070119 ACIGXT_RS11980 WP_003153104.1 2475076..2475411(+) (sinR) [Bacillus velezensis strain Shannan.BV80-12]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment