Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACIRQ6_RS07535 Genome accession   NZ_CP173029
Coordinates   1564652..1565170 (-) Length   172 a.a.
NCBI ID   WP_420863514.1    Uniprot ID   -
Organism   Algirhabdus cladophorae strain KMM 6494     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1559652..1570170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRQ6_RS07515 (ACIRQ6_07510) - 1560581..1561810 (+) 1230 WP_420863510.1 carbohydrate ABC transporter permease -
  ACIRQ6_RS07520 (ACIRQ6_07515) - 1561815..1563092 (+) 1278 WP_420863511.1 MGH1-like glycoside hydrolase domain-containing protein -
  ACIRQ6_RS07525 (ACIRQ6_07520) - 1563118..1564170 (+) 1053 WP_420863512.1 ABC transporter ATP-binding protein -
  ACIRQ6_RS07530 (ACIRQ6_07525) - 1564258..1564548 (-) 291 WP_420863513.1 hypothetical protein -
  ACIRQ6_RS07535 (ACIRQ6_07530) ssb 1564652..1565170 (-) 519 WP_420863514.1 single-stranded DNA-binding protein Machinery gene
  ACIRQ6_RS07540 (ACIRQ6_07535) - 1565313..1565909 (+) 597 WP_420863515.1 lytic transglycosylase domain-containing protein -
  ACIRQ6_RS07545 (ACIRQ6_07540) - 1565920..1566267 (-) 348 WP_420863516.1 hypothetical protein -
  ACIRQ6_RS07550 (ACIRQ6_07545) - 1566379..1568466 (-) 2088 WP_420863517.1 dipeptide ABC transporter ATP-binding protein -
  ACIRQ6_RS07555 (ACIRQ6_07550) - 1568563..1570008 (-) 1446 WP_420863518.1 ABC transporter permease -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18383.01 Da        Isoelectric Point: 4.8333

>NTDB_id=1070074 ACIRQ6_RS07535 WP_420863514.1 1564652..1565170(-) (ssb) [Algirhabdus cladophorae strain KMM 6494]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYTSTLTMLDGRGDNQGGGGGGGGYVPDQSGGYGGGQGGYDSGPSQGGDSYGGGG
APASDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1070074 ACIRQ6_RS07535 WP_420863514.1 1564652..1565170(-) (ssb) [Algirhabdus cladophorae strain KMM 6494]
ATGGCTGGCTCGGTAAACAAAGTAATTCTGATCGGAAACTTGGGCCGCGACCCAGAGGTCCGGACGTTCCAAAATGGCGG
TAAAGTGTGCAACCTGCGCATCGCCACATCCGAAAATTGGAAAGACCGCAACACAGGCGAGCGCCGCGAGAAAACCGAAT
GGCATTCTGTCGCGATCTTTAGCGAACCTTTGGCCCGCGTGGCCGAGCAGTATTTGCGAAAAGGCTCGAAGGTTTATCTG
GAAGGCCAGTTGGAGACCCGTAAATGGCAGGACCAATCCGGTCAAGATCGCTATAGCACCGAAGTTGTGCTGCGGCCCTA
CACATCGACGCTGACCATGCTGGATGGTCGCGGTGATAACCAAGGCGGCGGCGGTGGCGGTGGCGGCTATGTGCCCGACC
AATCCGGCGGCTACGGTGGCGGCCAAGGCGGCTATGACAGCGGCCCGTCCCAAGGTGGTGACAGCTATGGTGGAGGCGGC
GCCCCTGCTTCGGATCTAGACGACGAGATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.857

100

0.558
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.535
  ssb Neisseria meningitidis MC58

42.458

100

0.442
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.436

Multiple sequence alignment