Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACIFYW_RS02340 Genome accession   NZ_CP173026
Coordinates   488043..488918 (-) Length   291 a.a.
NCBI ID   WP_267774830.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483043..493918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS02320 (ACIFYW_02320) parC 483977..486262 (+) 2286 WP_000102515.1 DNA topoisomerase IV subunit A -
  ACIFYW_RS02325 (ACIFYW_02325) yacG 486311..486508 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  ACIFYW_RS02330 (ACIFYW_02330) zapD 486666..487406 (-) 741 WP_000207194.1 cell division protein ZapD -
  ACIFYW_RS02335 (ACIFYW_02335) coaE 487438..488046 (-) 609 WP_000011553.1 dephospho-CoA kinase -
  ACIFYW_RS02340 (ACIFYW_02340) pilD 488043..488918 (-) 876 WP_267774830.1 A24 family peptidase Machinery gene
  ACIFYW_RS02345 (ACIFYW_02345) pilC 488976..490202 (-) 1227 WP_248431770.1 type II secretion system F family protein Machinery gene
  ACIFYW_RS02350 (ACIFYW_02350) pilB 490245..491933 (-) 1689 WP_404272710.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACIFYW_RS02355 (ACIFYW_02355) - 491940..492344 (-) 405 WP_057551631.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACIFYW_RS02360 (ACIFYW_02360) nadC 492589..493479 (-) 891 WP_000665278.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32433.74 Da        Isoelectric Point: 7.6293

>NTDB_id=1070028 ACIFYW_RS02340 WP_267774830.1 488043..488918(-) (pilD) [Vibrio cholerae strain SPH 24-01]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGKCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1070028 ACIFYW_RS02340 WP_267774830.1 488043..488918(-) (pilD) [Vibrio cholerae strain SPH 24-01]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCGAAAATCATGGAGCGTGAATGGCGCGCCGAGTGCGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCGGAGGGCAAACTGACCCTGAGTTTACCGCGTTCCACCTGTCCACACTGCCAAACCCCGATTCGCGTGATT
GATAATATTCCGCTACTCAGTTGGCTGGCGCTGCGCGGCAAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTAATTGCCACTCACTTTCCGTTCGGAGTTTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCAACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTGAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTTGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATCGATATGGCTTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75.694

98.969

0.749
  pilD Acinetobacter nosocomialis M2

54.044

93.471

0.505
  pilD Acinetobacter baumannii D1279779

53.676

93.471

0.502
  pilD Neisseria gonorrhoeae MS11

45.139

98.969

0.447

Multiple sequence alignment