Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ACIHQS_RS14625 Genome accession   NZ_CP173025
Coordinates   3073486..3077568 (-) Length   1360 a.a.
NCBI ID   WP_404228872.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3068486..3082568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS14590 (ACIHQS_14590) truB 3068986..3069879 (-) 894 WP_404228865.1 tRNA pseudouridine(55) synthase TruB -
  ACIHQS_RS14595 (ACIHQS_14595) rplS 3070016..3070387 (-) 372 WP_004660214.1 50S ribosomal protein L19 -
  ACIHQS_RS14600 (ACIHQS_14600) trmD 3070584..3071324 (-) 741 WP_257735848.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACIHQS_RS14605 (ACIHQS_14605) rimM 3071373..3071921 (-) 549 WP_257735849.1 ribosome maturation factor RimM -
  ACIHQS_RS14610 (ACIHQS_14610) rpsP 3071938..3072195 (-) 258 WP_004877778.1 30S ribosomal protein S16 -
  ACIHQS_RS14615 (ACIHQS_14615) pilE 3072492..3072953 (-) 462 WP_257735850.1 type IV pilin protein Machinery gene
  ACIHQS_RS14620 (ACIHQS_14620) - 3072947..3073498 (-) 552 WP_308218271.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACIHQS_RS14625 (ACIHQS_14625) pilY1 3073486..3077568 (-) 4083 WP_404228872.1 PilC/PilY family type IV pilus protein Machinery gene
  ACIHQS_RS14630 (ACIHQS_14630) - 3077569..3078405 (-) 837 WP_257735852.1 PilX N-terminal domain-containing pilus assembly protein -
  ACIHQS_RS14635 (ACIHQS_14635) pilW 3078405..3079409 (-) 1005 WP_404228876.1 PilW family protein Machinery gene
  ACIHQS_RS14640 (ACIHQS_14640) pilV 3079410..3079952 (-) 543 WP_404228879.1 type IV pilus modification protein PilV Machinery gene
  ACIHQS_RS14645 (ACIHQS_14645) - 3079952..3080452 (-) 501 WP_257735854.1 Tfp pilus assembly protein FimT/FimU -
  ACIHQS_RS14650 (ACIHQS_14650) ispH 3080593..3081543 (-) 951 WP_278596571.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACIHQS_RS14655 (ACIHQS_14655) gmk 3081646..3082269 (+) 624 WP_007480690.1 guanylate kinase -

Sequence

Protein


Download         Length: 1360 a.a.        Molecular weight: 145383.16 Da        Isoelectric Point: 7.9218

>NTDB_id=1070007 ACIHQS_RS14625 WP_404228872.1 3073486..3077568(-) (pilY1) [Acinetobacter venetianus strain AVYS1]
MGRVRMKKQSMNLSPKKNTHHVKYGVSFTWAFTGTLLIASSIVQASDMQIYAVPTAGKKTIVMMLDTSGSMGYTLSSGYS
LYDDYGLTSNSCSVTYSASATTPSYNRYYCSVSANTTNTKVKDPASGCEVQSNGSYRCYDRLSRLKDGMFAFLDSNNPTL
DPVRVGLGHFSGYNTGTTSGDGSTGEILVAAKALGAVGSAQRTSLKNAVAGLVASSGTPSAHAYAEAAAYLMGSSTYSED
RYDIRKDSFIKRVRRSNGREDYRYCTQYRDNDIDYNNLWQDCRSSSYWSSWSTSTPSNFSDGIQYGTNSDSTYNYFYYYV
IDTKIFPDTNSGIPKSKNRDTTSNPDIVVNRSAADADALYQSPLPSASARVSCDGQGIYFLSDGAANSSGTTDATKVMSK
ALGNKGTGFSCSGGLSNTGSDSAWDCMGEFAKKLYNGGQIQSDVSQSTNPVNVPIQTAFVGFGSIMNNLTAASGAGDARN
ACRISSRTQADRSGDDKCSPNQPDYAVNSPGYGNGGFFPTQSSSGVTDSVISFINNLGATPLEPLTTGAISVPADALSPS
GLQPYGYLRALEPDPQSNKLIWAGNLKRYKVILSGANAGAFGAADGTTLVFNKDGSFRTNTKDLWNSISVYNNKSYADGG
IIGLGGAYSRVPMPITGQTENLLVTPKKYEFLAQPNALRTLFTDIASTGGATLAAATNGASLLRIPAGPIPQTGVSAYVL
NQFNTQDTLKDIPIFSKQKLLNYLGFSVPLDSTATSLPTPLTLSSTPHLAMGGSIHSFPVQLTYSGTLDSMGNLTSTRSQ
SILYGTMDGGLHLVDSQTGVEQMVFVPSELLRNTTASKALVKGEGGPVAPMAGLDGAWVADSLYTAKKASSPSDENVVKA
RQMNVYGGLRMGGESYYALDVLDPTSPKFLFRVGRDQSDFSRMGQSWSKPVLANVRIDNQIKRVMIVGGGYDQCYENPKF
SLGSNVSTTEFPDTSCNNKTAAQGNAVYMIDAKNGALLWWTSNTGANTNNANMKHSIVSRISAIDRDGDGLIDHLYFGDL
GGQVFRADLNNTAGTTKANFGKRVVRLANLATDASGNALSGGKNPRFYEAPTVTIHDQGSTTFMLIGLASGNRSTPLDVF
PLQGREGMLPYNSLNDRLVNNVYGVIDRDFIKRDLITGTPTISTQDINLAAMQKNPQLLTGNIPNVFIGTSPAKNGWYRS
LSSNSKGQERADNTFRVPGGMKAFEEPIAVTGNFIVPVYDPQGTGIEPKNPCLPRVVGETDRQRYCLPFGVCINSNGTVN
SSDEEGTGFKTKTENCPANVVECNDNTLGAGIVGITPVPREESAADSCPDITIAGNEKGSGLWKCVPTINPTKWYERWKK

Nucleotide


Download         Length: 4083 bp        

>NTDB_id=1070007 ACIHQS_RS14625 WP_404228872.1 3073486..3077568(-) (pilY1) [Acinetobacter venetianus strain AVYS1]
ATGGGGAGAGTTAGGATGAAAAAGCAAAGTATGAATTTAAGTCCCAAAAAAAATACTCACCATGTTAAGTATGGTGTGTC
ATTCACTTGGGCATTTACTGGAACACTGTTGATAGCATCGTCGATTGTTCAAGCTAGTGATATGCAAATATATGCAGTTC
CAACGGCTGGTAAAAAGACGATTGTAATGATGTTGGACACATCAGGGTCGATGGGTTATACGCTGAGTTCAGGTTATAGT
TTATATGATGATTATGGGCTAACTAGCAATAGCTGTAGCGTAACATACTCGGCAAGTGCAACTACGCCATCATACAACAG
ATATTATTGTAGTGTTTCGGCAAATACAACAAATACGAAAGTAAAAGATCCTGCGTCAGGCTGTGAAGTACAGTCAAATG
GTAGCTATCGTTGTTATGATCGTCTTAGTCGTTTGAAAGATGGTATGTTTGCATTCCTAGATAGTAATAATCCAACCCTA
GATCCAGTTCGTGTTGGTTTAGGGCATTTCTCTGGCTACAATACTGGAACTACGAGTGGTGATGGCTCTACAGGCGAGAT
ACTAGTTGCAGCTAAAGCTTTAGGTGCTGTTGGGTCAGCCCAACGAACTTCGTTAAAAAATGCGGTAGCTGGATTAGTCG
CAAGTAGTGGTACTCCTTCTGCCCATGCATATGCTGAAGCCGCTGCTTATCTCATGGGATCAAGTACATATTCTGAAGAT
AGATATGATATTAGGAAAGATAGTTTCATAAAACGCGTTAGACGTTCTAATGGTCGGGAGGATTATCGTTATTGTACTCA
ATATCGTGATAATGATATTGATTACAATAATCTTTGGCAAGATTGTCGCAGTAGTAGTTATTGGTCAAGTTGGTCTACGT
CTACACCTAGCAATTTTTCTGATGGAATTCAATATGGTACTAATAGTGATTCTACATATAATTATTTTTACTACTATGTG
ATTGATACTAAAATTTTCCCTGATACAAATAGCGGTATACCAAAATCAAAGAATAGGGATACAACCTCTAATCCTGATAT
TGTAGTTAATCGATCTGCAGCTGATGCAGATGCTTTGTATCAATCTCCATTACCTTCTGCTTCTGCTAGAGTATCTTGTG
ATGGACAAGGTATTTATTTCTTATCTGATGGTGCTGCGAATAGCTCTGGAACTACTGACGCTACTAAAGTCATGTCCAAA
GCATTAGGTAATAAAGGTACTGGTTTTAGTTGTTCTGGTGGGTTAAGTAACACTGGTAGTGATTCTGCTTGGGATTGCAT
GGGCGAGTTTGCTAAAAAATTATATAATGGCGGACAGATTCAATCAGATGTTAGTCAAAGTACTAACCCTGTAAATGTGC
CGATTCAAACAGCATTTGTTGGTTTTGGCTCAATAATGAATAATTTAACAGCAGCCTCAGGTGCTGGGGATGCACGTAAT
GCTTGTAGAATAAGCTCAAGGACACAAGCAGATCGTAGTGGTGATGATAAATGTTCTCCAAACCAACCTGATTATGCTGT
TAATTCCCCTGGATATGGTAATGGTGGTTTTTTCCCTACACAAAGCTCATCAGGTGTGACAGATAGTGTAATATCTTTTA
TCAACAATTTAGGAGCGACTCCTTTAGAGCCACTTACTACAGGAGCGATTTCTGTTCCAGCTGATGCATTGAGCCCTTCT
GGCTTACAGCCATATGGTTATTTACGAGCTTTAGAGCCAGACCCACAAAGTAATAAATTAATATGGGCTGGTAATTTAAA
GCGTTACAAAGTAATTTTGTCTGGTGCTAATGCTGGTGCTTTTGGTGCCGCTGATGGCACAACTCTCGTATTTAATAAAG
ACGGATCATTTAGAACGAATACTAAAGATTTATGGAATAGTATTTCTGTTTATAATAATAAAAGCTACGCTGATGGTGGA
ATTATTGGGTTGGGTGGAGCATATTCACGTGTACCAATGCCAATTACAGGGCAAACTGAAAATCTATTGGTTACCCCAAA
GAAATATGAGTTTTTAGCCCAACCGAATGCTTTACGAACACTATTTACAGACATTGCCTCAACAGGAGGAGCAACTTTAG
CAGCCGCTACTAATGGAGCAAGTTTGTTACGTATTCCAGCGGGTCCAATCCCACAAACTGGTGTGTCTGCATATGTGCTT
AATCAGTTTAATACTCAAGATACGTTAAAAGACATTCCTATTTTTAGTAAACAGAAATTACTTAACTATTTAGGATTTAG
TGTCCCACTAGATTCAACAGCTACATCTTTACCAACACCATTAACGCTTTCATCTACTCCTCATTTAGCTATGGGCGGTA
GTATTCATTCTTTTCCTGTACAACTTACTTACTCAGGTACTTTAGATTCCATGGGGAATTTAACTAGTACACGTAGCCAA
TCAATTCTATATGGAACAATGGATGGCGGATTACATCTTGTAGATAGTCAAACAGGTGTAGAGCAAATGGTATTTGTACC
ATCTGAGCTCCTGCGAAATACGACTGCTTCTAAAGCCTTAGTGAAAGGGGAAGGCGGTCCAGTAGCACCTATGGCTGGGC
TAGATGGTGCTTGGGTTGCAGACTCTTTATATACCGCTAAAAAAGCAAGTTCGCCAAGTGATGAAAATGTAGTTAAAGCC
CGTCAAATGAATGTTTATGGCGGATTAAGAATGGGGGGGGAAAGCTATTATGCTCTAGATGTGTTAGACCCAACGTCACC
GAAATTTTTATTCAGAGTTGGTAGAGATCAAAGCGATTTCAGTCGCATGGGACAATCTTGGTCAAAGCCTGTACTTGCTA
ATGTTCGTATTGATAATCAAATCAAGCGGGTTATGATCGTTGGGGGAGGTTATGATCAATGTTATGAAAATCCTAAATTT
AGTCTAGGTTCAAATGTTTCGACTACAGAGTTTCCTGATACGTCTTGTAATAATAAAACGGCAGCACAAGGAAACGCTGT
TTATATGATTGATGCAAAAAATGGTGCTCTTCTATGGTGGACAAGTAATACTGGAGCAAATACAAATAATGCGAATATGA
AGCACAGTATTGTTAGTCGAATTAGTGCTATAGATCGAGATGGAGATGGTCTTATTGATCATCTATATTTTGGTGATTTA
GGTGGTCAAGTTTTCCGAGCAGATCTAAATAATACAGCTGGAACAACAAAAGCAAATTTTGGTAAACGTGTTGTGCGATT
GGCAAATCTTGCAACAGATGCTAGTGGGAATGCTCTTTCTGGTGGGAAAAACCCTCGTTTCTATGAGGCTCCTACTGTCA
CGATACATGATCAGGGTTCAACAACATTCATGTTAATCGGTTTAGCTTCTGGAAACCGTAGCACCCCTTTGGATGTATTC
CCTTTACAAGGGCGAGAAGGAATGTTGCCATACAACTCATTAAATGATCGTTTGGTCAATAATGTATATGGTGTAATTGA
TCGTGACTTTATTAAAAGAGATTTAATTACTGGGACACCAACTATTTCCACTCAAGATATCAATTTAGCTGCGATGCAAA
AAAATCCACAGTTGTTGACAGGCAATATTCCTAACGTATTCATTGGTACTTCACCAGCCAAAAATGGTTGGTATCGTTCT
CTTTCAAGTAATAGTAAAGGGCAGGAGAGAGCAGATAATACTTTCCGTGTACCTGGAGGTATGAAAGCATTTGAAGAGCC
AATCGCCGTGACTGGAAACTTTATTGTTCCTGTTTATGATCCACAGGGAACAGGTATTGAACCGAAAAATCCATGTTTAC
CTAGGGTCGTTGGTGAAACAGACCGTCAGCGTTACTGCTTACCTTTCGGAGTTTGTATAAACTCTAATGGAACAGTCAAT
TCTTCAGACGAAGAAGGCACTGGTTTTAAAACAAAAACAGAAAATTGCCCTGCAAATGTAGTTGAGTGTAATGATAATAC
ACTAGGGGCTGGTATTGTCGGGATAACACCTGTCCCACGAGAAGAAAGTGCAGCTGATTCATGTCCAGATATTACGATTG
CAGGCAATGAAAAAGGCTCTGGCTTGTGGAAATGTGTTCCTACCATTAACCCAACAAAATGGTACGAACGATGGAAAAAA
TAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(782-1062)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

52.941

92.5

0.49

Multiple sequence alignment