Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACIHQS_RS14635 Genome accession   NZ_CP173025
Coordinates   3078405..3079409 (-) Length   334 a.a.
NCBI ID   WP_404228876.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3073405..3084409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS14625 (ACIHQS_14625) pilY1 3073486..3077568 (-) 4083 WP_404228872.1 PilC/PilY family type IV pilus protein Machinery gene
  ACIHQS_RS14630 (ACIHQS_14630) - 3077569..3078405 (-) 837 WP_257735852.1 PilX N-terminal domain-containing pilus assembly protein -
  ACIHQS_RS14635 (ACIHQS_14635) pilW 3078405..3079409 (-) 1005 WP_404228876.1 PilW family protein Machinery gene
  ACIHQS_RS14640 (ACIHQS_14640) pilV 3079410..3079952 (-) 543 WP_404228879.1 type IV pilus modification protein PilV Machinery gene
  ACIHQS_RS14645 (ACIHQS_14645) - 3079952..3080452 (-) 501 WP_257735854.1 Tfp pilus assembly protein FimT/FimU -
  ACIHQS_RS14650 (ACIHQS_14650) ispH 3080593..3081543 (-) 951 WP_278596571.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACIHQS_RS14655 (ACIHQS_14655) gmk 3081646..3082269 (+) 624 WP_007480690.1 guanylate kinase -
  ACIHQS_RS14660 (ACIHQS_14660) rpoZ 3082339..3082617 (+) 279 WP_004877793.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36119.68 Da        Isoelectric Point: 6.4820

>NTDB_id=1070008 ACIHQS_RS14635 WP_404228876.1 3078405..3079409(-) (pilW) [Acinetobacter venetianus strain AVYS1]
MKAYSYKSKKNLFQQGFTLVELMVALALGLLISAAAVQLFLGGVLTSRMQEANAELQNSGVFGLDYVARDIRLSNYINTD
FPNLNEQTPWGGVVLTARTATLTDANIPIPVSAPFISTGLLSHSVGTGESVSSTQNEWQGLSNVNLPSDQLTIQFVAPNA
MVNCEGENVQQGDYVIQRYFIRRANAVQTSGTDYGLACDANTPTPTGTPPVAEPNSITGFGGAGELIMPRVDHFSVLLGT
KNEAGNLAYYTINQYRNVAASARTAATPVEPPRIVSVKLAVLVRSTDNTRNNDIDLSRNFNVLNQSVILNDTNTRFARRV
YSTTVTFRNGLGEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1070008 ACIHQS_RS14635 WP_404228876.1 3078405..3079409(-) (pilW) [Acinetobacter venetianus strain AVYS1]
ATGAAAGCATATTCATATAAATCCAAAAAAAACTTATTTCAACAAGGCTTTACACTTGTTGAGTTGATGGTGGCTTTAGC
TTTAGGGCTTCTCATCTCTGCTGCTGCTGTACAGCTTTTCCTTGGAGGGGTTTTAACCTCTAGAATGCAAGAAGCAAATG
CTGAGTTACAAAATAGTGGAGTTTTTGGGCTAGACTATGTCGCACGTGATATTCGTTTGTCGAATTATATTAATACTGAT
TTCCCAAATTTAAATGAACAGACTCCTTGGGGAGGTGTTGTTCTAACTGCAAGAACAGCAACTCTTACTGATGCAAATAT
ACCTATTCCAGTCTCTGCACCATTTATTTCAACAGGGTTATTAAGCCACAGTGTTGGTACAGGAGAGTCTGTAAGCTCTA
CACAAAATGAATGGCAAGGTTTATCAAATGTTAATCTGCCAAGTGATCAACTCACCATACAATTTGTTGCTCCCAATGCG
ATGGTAAATTGTGAAGGTGAAAATGTTCAACAAGGTGATTATGTAATCCAACGTTACTTCATAAGACGCGCAAATGCAGT
TCAAACGAGTGGTACTGATTATGGATTAGCTTGTGATGCAAATACACCTACACCAACTGGGACTCCACCTGTAGCAGAAC
CAAACTCAATAACCGGATTTGGTGGAGCTGGTGAACTTATTATGCCAAGGGTGGATCATTTTTCAGTGCTGCTAGGAACC
AAAAATGAGGCTGGAAACTTAGCTTATTACACAATTAATCAATATAGAAATGTTGCAGCATCTGCACGTACAGCAGCTAC
ACCAGTAGAACCTCCTAGGATTGTTTCTGTTAAGTTAGCTGTTTTAGTGCGCTCGACAGATAATACTCGTAATAATGATA
TAGACTTAAGTAGAAATTTTAATGTTTTAAATCAGAGTGTTATCTTGAATGATACTAACACTAGATTTGCTCGCCGAGTG
TATAGCACAACTGTGACTTTTAGAAATGGTTTGGGGGAAAAATAA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(217-329)

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

53.666

100

0.548

Multiple sequence alignment