Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACIHQS_RS14615 Genome accession   NZ_CP173025
Coordinates   3072492..3072953 (-) Length   153 a.a.
NCBI ID   WP_257735850.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3067492..3077953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS14580 (ACIHQS_14580) - 3067609..3068055 (-) 447 WP_019385491.1 hemerythrin domain-containing protein -
  ACIHQS_RS14585 (ACIHQS_14585) - 3068205..3068975 (-) 771 WP_007480672.1 TSUP family transporter -
  ACIHQS_RS14590 (ACIHQS_14590) truB 3068986..3069879 (-) 894 WP_404228865.1 tRNA pseudouridine(55) synthase TruB -
  ACIHQS_RS14595 (ACIHQS_14595) rplS 3070016..3070387 (-) 372 WP_004660214.1 50S ribosomal protein L19 -
  ACIHQS_RS14600 (ACIHQS_14600) trmD 3070584..3071324 (-) 741 WP_257735848.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACIHQS_RS14605 (ACIHQS_14605) rimM 3071373..3071921 (-) 549 WP_257735849.1 ribosome maturation factor RimM -
  ACIHQS_RS14610 (ACIHQS_14610) rpsP 3071938..3072195 (-) 258 WP_004877778.1 30S ribosomal protein S16 -
  ACIHQS_RS14615 (ACIHQS_14615) pilE 3072492..3072953 (-) 462 WP_257735850.1 type IV pilin protein Machinery gene
  ACIHQS_RS14620 (ACIHQS_14620) - 3072947..3073498 (-) 552 WP_308218271.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACIHQS_RS14625 (ACIHQS_14625) pilY1 3073486..3077568 (-) 4083 WP_404228872.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16687.31 Da        Isoelectric Point: 9.3889

>NTDB_id=1070006 ACIHQS_RS14615 WP_257735850.1 3072492..3072953(-) (pilE) [Acinetobacter venetianus strain AVYS1]
MVTINKGFTLVELMVVIAIIGILAAIAYPSYVSYKIRVDRTDTQVEMMEISHRLAKFKMANNTYAGRTAENIYGVATIPR
VQPLYNIVLTDVNGIALTNSAANVRTWLLVATPRSGTKQFGDGVLCLDDQGQKFWAKGATACSLSATSNWTGH

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1070006 ACIHQS_RS14615 WP_257735850.1 3072492..3072953(-) (pilE) [Acinetobacter venetianus strain AVYS1]
ATGGTAACTATTAATAAGGGTTTTACTTTAGTTGAGTTAATGGTCGTAATAGCAATTATTGGTATTTTAGCTGCGATAGC
ATATCCATCTTATGTAAGCTATAAAATTCGAGTTGATAGAACCGATACTCAGGTTGAAATGATGGAAATTTCTCATCGGT
TAGCTAAATTCAAGATGGCAAATAATACTTATGCTGGGAGAACTGCTGAGAATATCTATGGGGTTGCAACTATACCAAGG
GTTCAGCCTTTATATAATATTGTTCTAACAGATGTAAATGGCATTGCTCTAACCAACTCAGCAGCTAATGTTAGAACGTG
GTTGCTAGTAGCAACACCTAGAAGTGGTACGAAGCAATTTGGGGATGGCGTGCTTTGTTTAGATGATCAGGGACAAAAGT
TTTGGGCGAAAGGAGCAACAGCTTGTTCTTTATCTGCAACATCTAATTGGACTGGTCATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

49.333

98.039

0.484
  comF Acinetobacter baylyi ADP1

45.638

97.386

0.444

Multiple sequence alignment