Detailed information NTG1069912

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PA5957_RS02045
• Genome accession: NZ_CP173023
• Coordinates: 439392..440540 (+)
• Length: 382 a.a.
• NCBI ID: WP_003100959.1
• Uniprot ID: G3XCX3
• Organism: Pseudomonas aeruginosa strain PA5957
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 434392..445540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA5957_RS02020	-	435543..435839 (-)	297	WP_043095950.1	DUF167 domain-containing protein	-
PA5957_RS02025 (PA5957_00400)	-	435836..436429 (-)	594	WP_003084544.1	YggT family protein	-
PA5957_RS02030 (PA5957_00401)	proC	436440..437261 (-)	822	WP_003084546.1	pyrroline-5-carboxylate reductase	-
PA5957_RS02035 (PA5957_00402)	-	437273..437965 (-)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
PA5957_RS02040 (PA5957_00403)	pilT	438180..439214 (+)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
PA5957_RS02045 (PA5957_00404)	pilU	439392..440540 (+)	1149	WP_003100959.1	type IV pilus ATPase PilU	Machinery gene
PA5957_RS02050 (PA5957_00405)	czcD	440548..441447 (-)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
PA5957_RS02055 (PA5957_00406)	-	441601..442005 (+)	405	WP_003084560.1	NINE protein	-
PA5957_RS02060 (PA5957_00407)	-	442248..443621 (+)	1374	WP_003100955.1	pyridoxal-phosphate dependent enzyme	-
PA5957_RS02065 (PA5957_00408)	-	443618..444802 (+)	1185	WP_003110017.1	cystathionine gamma-synthase	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42532.81 Da
• Isoelectric Point: 6.7792

>NTDB_id=1069912 PA5957_RS02045 WP_003100959.1 439392..440540(+) (pilU) [Pseudomonas aeruginosa strain PA5957]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRLMIKLGSESDADHLSSLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=1069912 PA5957_RS02045 WP_003100959.1 439392..440540(+) (pilU) [Pseudomonas aeruginosa strain PA5957]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGACCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAGCCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ACGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

3D structure

• AlphaFold DB: G3XCX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.482	100	0.885
pilU	Acinetobacter baylyi ADP1	65.266	93.455	0.61
pilU	Vibrio cholerae strain A1552	60.286	91.623	0.552
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382