Detailed information NTG1069772

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RSP597_RS13510
• Genome accession: NZ_CP172969
• Coordinates: 2828141..2829022 (-)
• Length: 293 a.a.
• NCBI ID: WP_042590560.1
• Uniprot ID: -
• Organism: Ralstonia solanacearum strain P597
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2823141..2834022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RSP597_RS13480 (RSP597_013475)	argJ	2823843..2825072 (+)	1230	WP_013205088.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
RSP597_RS13485 (RSP597_013480)	-	2825088..2825972 (+)	885	WP_013205089.1	ATP-binding protein	-
RSP597_RS13490 (RSP597_013485)	-	2825950..2826411 (+)	462	WP_042590562.1	NUDIX domain-containing protein	-
RSP597_RS13495 (RSP597_013490)	yacG	2826404..2826622 (-)	219	WP_013205091.1	DNA gyrase inhibitor YacG	-
RSP597_RS13500 (RSP597_013495)	zapD	2826638..2827396 (-)	759	WP_013205092.1	cell division protein ZapD	-
RSP597_RS13505 (RSP597_013500)	coaE	2827514..2828128 (-)	615	WP_064044960.1	dephospho-CoA kinase	-
RSP597_RS13510 (RSP597_013505)	pilD	2828141..2829022 (-)	882	WP_042590560.1	A24 family peptidase	Machinery gene
RSP597_RS13515 (RSP597_013510)	pilG	2829025..2830290 (-)	1266	WP_064044961.1	type II secretion system F family protein	Machinery gene
RSP597_RS13520 (RSP597_013515)	pilB	2830335..2832071 (-)	1737	WP_064044962.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RSP597_RS13525 (RSP597_013520)	-	2832319..2833596 (-)	1278	WP_042590559.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31608.62 Da
• Isoelectric Point: 7.6173

>NTDB_id=1069772 RSP597_RS13510 WP_042590560.1 2828141..2829022(-) (pilD) [Ralstonia solanacearum strain P597]
MSGMFAIPTLALLPAWFVIGAAALLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVAPRSACPSCGH
QIKAIENIPVISWLALRGRCSACKTPISWRYPAVELVTCVLTGACLWHFGPTWVAVASAALLWFLIAATMIDADTQLLPD
AITQPLLWLGLLVNLFDMFARLPDAVIGAMAGYLFLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLILLSS
VVGLVFGAARIARGAESDSPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=1069772 RSP597_RS13510 WP_042590560.1 2828141..2829022(-) (pilD) [Ralstonia solanacearum strain P597]
ATGTCCGGGATGTTCGCCATTCCCACGCTGGCGCTACTGCCCGCGTGGTTCGTGATCGGCGCGGCGGCGCTGCTGGGGCT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATCCACCGCTTACCGCGCATGATCGAACGCGAGGAGGCCAACTACATCGCCG
AGCTGCGCAACGAACCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGCGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGATCGAGAACATCCCGGTGATCAGTTGGCTGGCATTGCGCGGCCGTTGCAGCGCCTGCAAGACGCCCAT
CTCCTGGCGCTATCCCGCCGTGGAACTGGTGACCTGCGTACTGACCGGCGCCTGCCTGTGGCATTTCGGACCGACCTGGG
TGGCGGTCGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGCCACGATGATCGACGCCGACACGCAACTGCTGCCCGAT
GCCATCACCCAACCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCGACATGTTCGCGCGGCTGCCGGACGCAGTGAT
CGGCGCGATGGCCGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTACAAACTGCTGCGAGGCCGGGAGGGCATGGGCT
ACGGCGACTTCAAGCTGATGGCCGCGCTCGGTGCCTGGTTCGGCTGGCAGGCGCTGCCGTTGTTGATCCTGCTGTCGTCG
GTGGTCGGCCTGGTGTTCGGGGCGGCGCGCATCGCGCGTGGCGCCGAAAGCGACTCCCCATTTTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTCATCGCCCTGCTGGCCGGCCCACAGCTGGTGGCATTGACGGGACTCGCACCGCTGCTGGCGCGGT
AA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.962	90.444	0.488
pilD	Vibrio campbellii strain DS40M4	50.549	93.174	0.471
pilD	Neisseria gonorrhoeae MS11	50	91.468	0.457
pilD	Acinetobacter nosocomialis M2	46.992	90.785	0.427
pilD	Acinetobacter baumannii D1279779	46.992	90.785	0.427