Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACF2JY_RS20635 Genome accession   NZ_CP172966
Coordinates   3970546..3971064 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain cel     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3965546..3976064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS20615 (ACF2JY_20615) yyzM 3966620..3966826 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  ACF2JY_RS20620 (ACF2JY_20620) yyaE 3966877..3968880 (+) 2004 WP_046381481.1 molybdopterin-dependent oxidoreductase -
  ACF2JY_RS20625 (ACF2JY_20625) ychF 3969007..3970107 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACF2JY_RS20630 (ACF2JY_20630) rpsF 3970218..3970505 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  ACF2JY_RS20635 (ACF2JY_20635) ssbA 3970546..3971064 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACF2JY_RS20640 (ACF2JY_20640) rpsR 3971108..3971347 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACF2JY_RS20645 (ACF2JY_20645) xth 3971412..3972170 (+) 759 WP_038429969.1 exodeoxyribonuclease III -
  ACF2JY_RS20650 (ACF2JY_20650) ccpB 3972229..3973164 (+) 936 WP_038429968.1 transcriptional regulator CcpB -
  ACF2JY_RS20655 (ACF2JY_20655) yyaH 3973220..3973600 (+) 381 WP_003244460.1 VOC family protein -
  ACF2JY_RS20660 (ACF2JY_20660) maa 3973618..3974172 (+) 555 WP_033884396.1 sugar O-acetyltransferase -
  ACF2JY_RS20665 (ACF2JY_20665) yyaJ 3974206..3975561 (-) 1356 WP_029318525.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1069753 ACF2JY_RS20635 WP_003219228.1 3970546..3971064(+) (ssbA) [Bacillus subtilis strain cel]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1069753 ACF2JY_RS20635 WP_003219228.1 3970546..3971064(+) (ssbA) [Bacillus subtilis strain cel]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment