Detailed information NTG1069653

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACIJUN_RS16845
• Genome accession: NZ_CP172962
• Coordinates: 3590947..3592284 (+)
• Length: 445 a.a.
• NCBI ID: WP_003094694.1
• Uniprot ID: A0A0H2ZG94
• Organism: Pseudomonas aeruginosa strain YB1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3585947..3597284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIJUN_RS16820 (ACIJUN_16825)	pgeF	3586090..3586818 (-)	729	WP_012614543.1	peptidoglycan editing factor PgeF	-
ACIJUN_RS16825 (ACIJUN_16830)	rluD	3586815..3587777 (-)	963	WP_003094686.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACIJUN_RS16830 (ACIJUN_16835)	-	3587923..3588948 (+)	1026	WP_003102590.1	outer membrane protein assembly factor BamD	-
ACIJUN_RS16835 (ACIJUN_16840)	-	3589105..3589350 (+)	246	WP_009316269.1	PP0621 family protein	-
ACIJUN_RS16840 (ACIJUN_16845)	pilS	3589340..3590932 (+)	1593	WP_196686611.1	two-component system sensor histidine kinase PilS	Regulator
ACIJUN_RS16845 (ACIJUN_16850)	pilR	3590947..3592284 (+)	1338	WP_003094694.1	two-component system response regulator PilR	Regulator
ACIJUN_RS16850 (ACIJUN_16855)	thiO	3592330..3593424 (-)	1095	WP_003145981.1	glycine oxidase ThiO	-
ACIJUN_RS16855 (ACIJUN_16860)	-	3593559..3594068 (+)	510	WP_003102595.1	Tfp pilus assembly protein FimT/FimU	-
ACIJUN_RS16860 (ACIJUN_16865)	-	3594174..3594680 (+)	507	WP_003102598.1	Tfp pilus assembly protein FimT/FimU	-
ACIJUN_RS16865 (ACIJUN_16870)	pilV	3594671..3595228 (+)	558	WP_003119423.1	type 4a pilus minor pilin PilV	Machinery gene
ACIJUN_RS16870 (ACIJUN_16875)	pilW	3595225..3596049 (+)	825	WP_009875846.1	type 4a pilus minor pilin PilW	-
ACIJUN_RS16875 (ACIJUN_16880)	pilX	3596046..3596633 (+)	588	WP_003112826.1	type 4a pilus minor pilin PilX	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49737.06 Da
• Isoelectric Point: 5.8654

>NTDB_id=1069653 ACIJUN_RS16845 WP_003094694.1 3590947..3592284(+) (pilR) [Pseudomonas aeruginosa strain YB1]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=1069653 ACIJUN_RS16845 WP_003094694.1 3590947..3592284(+) (pilR) [Pseudomonas aeruginosa strain YB1]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

3D structure

• AlphaFold DB: A0A0H2ZG94

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	100	100	1
pilR	Acinetobacter baumannii strain A118	51.198	100	0.528
luxO	Vibrio cholerae strain A1552	38.17	100	0.384