Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACIHQR_RS34225 Genome accession   NZ_CP172866
Coordinates   8571470..8571979 (-) Length   169 a.a.
NCBI ID   WP_404365381.1    Uniprot ID   -
Organism   Corallococcus coralloides strain KYC2213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8566470..8576979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQR_RS34205 (ACIHQR_34205) selB 8566712..8568640 (-) 1929 WP_223740688.1 selenocysteine-specific translation elongation factor -
  ACIHQR_RS34210 (ACIHQR_34210) - 8568668..8569363 (-) 696 WP_223740689.1 phosphoribosyltransferase -
  ACIHQR_RS34215 (ACIHQR_34215) - 8569498..8570391 (-) 894 WP_223762801.1 Hsp33 family molecular chaperone HslO -
  ACIHQR_RS34220 (ACIHQR_34220) - 8570664..8571347 (+) 684 WP_223740691.1 succinate dehydrogenase -
  ACIHQR_RS34225 (ACIHQR_34225) ssb 8571470..8571979 (-) 510 WP_404365381.1 single-stranded DNA-binding protein Machinery gene
  ACIHQR_RS34230 (ACIHQR_34230) dacB 8572232..8574469 (-) 2238 WP_404365383.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  ACIHQR_RS34235 (ACIHQR_34235) - 8574604..8576220 (+) 1617 WP_404365385.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18157.03 Da        Isoelectric Point: 5.3106

>NTDB_id=1069592 ACIHQR_RS34225 WP_404365381.1 8571470..8571979(-) (ssb) [Corallococcus coralloides strain KYC2213]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGNGGGRRQQQGNGGYGQGRDDYGQPPPPMGMDDGGGMGGNP
GGADDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1069592 ACIHQR_RS34225 WP_404365381.1 8571470..8571979(-) (ssb) [Corallococcus coralloides strain KYC2213]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAAGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCAATGGCGGTGGGCGCCGGCAGCAGCAGGGCAACGGCGGCT
ACGGGCAGGGTCGTGACGACTACGGCCAGCCGCCGCCTCCCATGGGCATGGACGACGGTGGGGGCATGGGCGGCAACCCC
GGCGGCGCGGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.555

100

0.497
  ssb Glaesserella parasuis strain SC1401

42.391

100

0.462
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.456
  ssb Neisseria meningitidis MC58

48.227

83.432

0.402

Multiple sequence alignment