Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | ACFELM_RS04520 | Genome accession | NZ_CP172852 |
| Coordinates | 944062..944598 (+) | Length | 178 a.a. |
| NCBI ID | WP_025921208.1 | Uniprot ID | Q8KQ36 |
| Organism | Pseudomonas aeruginosa strain 238636E_ID015 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 939062..949598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFELM_RS04495 (ACFELM_04495) | yacG | 939231..939431 (-) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| ACFELM_RS04500 (ACFELM_04500) | coaE | 939428..940039 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| ACFELM_RS04505 (ACFELM_04505) | pilD | 940036..940908 (-) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| ACFELM_RS04510 (ACFELM_04510) | pilC | 940911..942128 (-) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| ACFELM_RS04515 (ACFELM_04515) | pilB | 942132..943835 (-) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACFELM_RS04520 (ACFELM_04520) | pilE | 944062..944598 (+) | 537 | WP_025921208.1 | pilin | Machinery gene |
| ACFELM_RS04525 (ACFELM_04525) | tfpZ | 944663..945400 (+) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| ACFELM_RS04535 (ACFELM_04535) | nadC | 945634..946482 (-) | 849 | WP_017148538.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACFELM_RS04540 (ACFELM_04540) | - | 946768..949023 (+) | 2256 | WP_003104913.1 | DUF1631 domain-containing protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18322.83 Da Isoelectric Point: 4.9984
>NTDB_id=1069274 ACFELM_RS04520 WP_025921208.1 944062..944598(+) (pilE) [Pseudomonas aeruginosa strain 238636E_ID015]
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR
Nucleotide
Download Length: 537 bp
>NTDB_id=1069274 ACFELM_RS04520 WP_025921208.1 944062..944598(+) (pilE) [Pseudomonas aeruginosa strain 238636E_ID015]
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
43.719 |
100 |
0.489 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.556 |
100 |
0.41 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.341 |
98.876 |
0.399 |
| pilA2 | Legionella pneumophila str. Paris |
39.773 |
98.876 |
0.393 |