Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACFELC_RS24495 | Genome accession | NZ_CP172849 |
| Coordinates | 5244896..5245768 (+) | Length | 290 a.a. |
| NCBI ID | WP_034071571.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 238641E_ID020 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5239896..5250768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFELC_RS24470 (ACFELC_24470) | nadC | 5240237..5241085 (+) | 849 | WP_073649707.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACFELC_RS24480 (ACFELC_24480) | pilA | 5241287..5241736 (-) | 450 | WP_021264133.1 | pilin | Machinery gene |
| ACFELC_RS24485 (ACFELC_24485) | pilB | 5241968..5243668 (+) | 1701 | WP_034071567.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACFELC_RS24490 (ACFELC_24490) | pilC | 5243672..5244892 (+) | 1221 | WP_033976387.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| ACFELC_RS24495 (ACFELC_24495) | pilD | 5244896..5245768 (+) | 873 | WP_034071571.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| ACFELC_RS24500 (ACFELC_24500) | coaE | 5245765..5246376 (+) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| ACFELC_RS24505 (ACFELC_24505) | yacG | 5246373..5246573 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| ACFELC_RS24510 (ACFELC_24510) | - | 5246610..5246819 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| ACFELC_RS24515 (ACFELC_24515) | - | 5246925..5247614 (-) | 690 | WP_089034719.1 | energy-coupling factor ABC transporter permease | - |
| ACFELC_RS24520 (ACFELC_24520) | - | 5247611..5248081 (-) | 471 | WP_033970459.1 | hypothetical protein | - |
| ACFELC_RS24525 (ACFELC_24525) | - | 5248078..5248503 (-) | 426 | WP_033976385.1 | GNAT family N-acetyltransferase | - |
| ACFELC_RS24530 (ACFELC_24530) | - | 5248636..5249265 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| ACFELC_RS24535 (ACFELC_24535) | - | 5249262..5249711 (+) | 450 | WP_033970456.1 | MOSC domain-containing protein | - |
| ACFELC_RS24540 (ACFELC_24540) | - | 5249737..5249907 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31805.87 Da Isoelectric Point: 7.7068
>NTDB_id=1069180 ACFELC_RS24495 WP_034071571.1 5244896..5245768(+) (pilD) [Pseudomonas aeruginosa strain 238641E_ID020]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVLGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVLGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=1069180 ACFELC_RS24495 WP_034071571.1 5244896..5245768(+) (pilD) [Pseudomonas aeruginosa strain 238641E_ID020]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GCTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GCTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |