Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACFVP7_RS13900 Genome accession   NZ_CP172606
Coordinates   2634929..2635360 (-) Length   143 a.a.
NCBI ID   WP_046381179.1    Uniprot ID   A0AA96ULP9
Organism   Bacillus sp. SG20033     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2629929..2640360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS13850 (ACFVP7_13850) sinI 2630122..2630295 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ACFVP7_RS13855 (ACFVP7_13855) sinR 2630329..2630664 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACFVP7_RS13860 (ACFVP7_13860) tasA 2630757..2631542 (-) 786 WP_072175550.1 biofilm matrix protein TasA -
  ACFVP7_RS13865 (ACFVP7_13865) sipW 2631606..2632178 (-) 573 WP_003230181.1 signal peptidase I SipW -
  ACFVP7_RS13870 (ACFVP7_13870) tapA 2632162..2632923 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  ACFVP7_RS13875 (ACFVP7_13875) - 2633195..2633521 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACFVP7_RS13880 (ACFVP7_13880) - 2633563..2633742 (-) 180 WP_029726723.1 YqzE family protein -
  ACFVP7_RS13885 (ACFVP7_13885) comGG 2633814..2634188 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ACFVP7_RS13890 (ACFVP7_13890) comGF 2634189..2634572 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  ACFVP7_RS13895 (ACFVP7_13895) comGE 2634598..2634945 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  ACFVP7_RS13900 (ACFVP7_13900) comGD 2634929..2635360 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  ACFVP7_RS13905 (ACFVP7_13905) comGC 2635350..2635646 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  ACFVP7_RS13910 (ACFVP7_13910) comGB 2635660..2636697 (-) 1038 WP_338730579.1 comG operon protein ComGB Machinery gene
  ACFVP7_RS13915 (ACFVP7_13915) comGA 2636684..2637754 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  ACFVP7_RS13920 (ACFVP7_13920) corA 2638166..2639119 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16109.78 Da        Isoelectric Point: 10.1947

>NTDB_id=1068309 ACFVP7_RS13900 WP_046381179.1 2634929..2635360(-) (comGD) [Bacillus sp. SG20033]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDMMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1068309 ACFVP7_RS13900 WP_046381179.1 2634929..2635360(-) (comGD) [Bacillus sp. SG20033]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TGATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979

Multiple sequence alignment