Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ACFMPA_RS12460 | Genome accession | NZ_CP172605 |
| Coordinates | 2444019..2444354 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. SG20032 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2439019..2449354
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFMPA_RS12440 (ACFMPA_12440) | gcvT | 2439611..2440699 (-) | 1089 | WP_015251720.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFMPA_RS12445 (ACFMPA_12445) | - | 2441141..2442814 (+) | 1674 | WP_004398544.1 | DEAD/DEAH box helicase | - |
| ACFMPA_RS12450 (ACFMPA_12450) | - | 2442835..2443629 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| ACFMPA_RS12455 (ACFMPA_12455) | sinI | 2443812..2443985 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| ACFMPA_RS12460 (ACFMPA_12460) | sinR | 2444019..2444354 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| ACFMPA_RS12465 (ACFMPA_12465) | tasA | 2444447..2445232 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| ACFMPA_RS12470 (ACFMPA_12470) | sipW | 2445296..2445868 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| ACFMPA_RS12475 (ACFMPA_12475) | tapA | 2445852..2446613 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACFMPA_RS12480 (ACFMPA_12480) | - | 2446885..2447211 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| ACFMPA_RS12485 (ACFMPA_12485) | - | 2447253..2447432 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| ACFMPA_RS12490 (ACFMPA_12490) | comGG | 2447504..2447878 (-) | 375 | WP_033884701.1 | ComG operon protein ComGG | Machinery gene |
| ACFMPA_RS12495 (ACFMPA_12495) | comGF | 2447879..2448262 (-) | 384 | WP_032726158.1 | ComG operon protein ComGF | Machinery gene |
| ACFMPA_RS12500 (ACFMPA_12500) | comGE | 2448288..2448635 (-) | 348 | WP_033884703.1 | ComG operon protein 5 | Machinery gene |
| ACFMPA_RS12505 (ACFMPA_12505) | comGD | 2448619..2449050 (-) | 432 | WP_015714255.1 | comG operon protein ComGD | Machinery gene |
| ACFMPA_RS12510 (ACFMPA_12510) | comGC | 2449040..2449336 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1068225 ACFMPA_RS12460 WP_003226345.1 2444019..2444354(+) (sinR) [Bacillus sp. SG20032]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1068225 ACFMPA_RS12460 WP_003226345.1 2444019..2444354(+) (sinR) [Bacillus sp. SG20032]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |