Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACHZFV_RS10575 | Genome accession | NZ_CP172584 |
| Coordinates | 2119543..2120052 (+) | Length | 169 a.a. |
| NCBI ID | WP_011651967.1 | Uniprot ID | - |
| Organism | Rhizobium johnstonii strain NaPi | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2114543..2125052
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHZFV_RS10560 (ACHZFV_10560) | - | 2115070..2115876 (-) | 807 | WP_011651964.1 | DUF72 domain-containing protein | - |
| ACHZFV_RS10565 (ACHZFV_10565) | - | 2115901..2116362 (-) | 462 | WP_011651965.1 | GNAT family N-acetyltransferase | - |
| ACHZFV_RS10570 (ACHZFV_10570) | uvrA | 2116359..2119280 (-) | 2922 | WP_011651966.1 | excinuclease ABC subunit UvrA | - |
| ACHZFV_RS10575 (ACHZFV_10575) | ssb | 2119543..2120052 (+) | 510 | WP_011651967.1 | single-stranded DNA-binding protein | Machinery gene |
| ACHZFV_RS10580 (ACHZFV_10580) | - | 2120177..2120824 (-) | 648 | WP_011651968.1 | MarC family protein | - |
| ACHZFV_RS10585 (ACHZFV_10585) | - | 2120886..2121068 (+) | 183 | WP_129557794.1 | hypothetical protein | - |
| ACHZFV_RS10590 (ACHZFV_10590) | gyrA | 2121061..2123898 (+) | 2838 | WP_011651969.1 | DNA gyrase subunit A | - |
| ACHZFV_RS10595 (ACHZFV_10595) | - | 2124082..2124216 (-) | 135 | WP_018445350.1 | hypothetical protein | - |
| ACHZFV_RS10600 (ACHZFV_10600) | - | 2124253..2124408 (-) | 156 | WP_003539654.1 | hypothetical protein | - |
| ACHZFV_RS10605 (ACHZFV_10605) | - | 2124543..2124821 (-) | 279 | WP_028744078.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18080.82 Da Isoelectric Point: 5.3175
>NTDB_id=1068142 ACHZFV_RS10575 WP_011651967.1 2119543..2120052(+) (ssb) [Rhizobium johnstonii strain NaPi]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGGGGNFS
RDLDDDIPF
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGGGGNFS
RDLDDDIPF
Nucleotide
Download Length: 510 bp
>NTDB_id=1068142 ACHZFV_RS10575 WP_011651967.1 2119543..2120052(+) (ssb) [Rhizobium johnstonii strain NaPi]
ATGGCTGGTAGCGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACTTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACTGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGCTCGACGCTTACGATGCTCGACGGCCGCGGTGAAGGTGGCGGTGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCCTCATCGCCGAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGATGATGACATCCCGTTCTGA
ATGGCTGGTAGCGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACTTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACTGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGCTCGACGCTTACGATGCTCGACGGCCGCGGTGAAGGTGGCGGTGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCCTCATCGCCGAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGATGATGACATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.289 |
100 |
0.515 |
| ssb | Glaesserella parasuis strain SC1401 |
43.979 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
39.011 |
100 |
0.42 |
| ssb | Neisseria gonorrhoeae MS11 |
38.547 |
100 |
0.408 |