Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACG2XO_RS09800 Genome accession   NZ_CP172558
Coordinates   2085996..2086511 (+) Length   171 a.a.
NCBI ID   WP_410497795.1    Uniprot ID   -
Organism   Chitinibacter sp. S2-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2080996..2091511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2XO_RS09790 (ACG2XO_09790) uvrA 2081484..2084351 (-) 2868 WP_410497794.1 excinuclease ABC subunit UvrA -
  ACG2XO_RS09795 (ACG2XO_09795) - 2084630..2085994 (+) 1365 WP_410500251.1 MFS transporter -
  ACG2XO_RS09800 (ACG2XO_09800) ssb 2085996..2086511 (+) 516 WP_410497795.1 single-stranded DNA-binding protein Machinery gene
  ACG2XO_RS09805 (ACG2XO_09805) - 2086601..2089075 (-) 2475 WP_410497796.1 EAL domain-containing protein -
  ACG2XO_RS09810 (ACG2XO_09810) - 2089072..2090511 (-) 1440 WP_410497797.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18457.48 Da        Isoelectric Point: 5.3108

>NTDB_id=1068037 ACG2XO_RS09800 WP_410497795.1 2085996..2086511(+) (ssb) [Chitinibacter sp. S2-10]
MASLNKVLLIGNLGKDPESRFLPSGGAVCNFSIATTESWKDKNTGAKQEKTEWHNITMYGRLAEIAGEYLKKGSQVYIEG
KLQTRKWQDKQTGADRYTTEIIADEMKMLGGRAGGGMGGGSQGGQGGGYGGDDFNQEYSAPQAPRQAPQAAPQQAARPAK
SFDDFEDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1068037 ACG2XO_RS09800 WP_410497795.1 2085996..2086511(+) (ssb) [Chitinibacter sp. S2-10]
ATGGCATCGTTGAACAAAGTGTTGCTGATCGGCAATTTGGGTAAAGACCCGGAATCGCGCTTTTTGCCGAGCGGCGGCGC
GGTATGCAATTTTTCAATTGCCACGACCGAGAGCTGGAAAGACAAAAACACCGGTGCCAAGCAGGAAAAAACCGAATGGC
ATAACATCACGATGTACGGCCGTTTGGCTGAAATCGCCGGTGAATACCTGAAAAAAGGCAGCCAGGTCTACATCGAGGGC
AAGCTGCAAACGCGCAAATGGCAGGATAAGCAAACCGGCGCAGATCGCTACACGACTGAAATTATCGCTGACGAGATGAA
AATGCTCGGCGGCCGTGCTGGTGGCGGAATGGGCGGTGGCTCGCAAGGTGGCCAAGGTGGCGGCTACGGCGGCGATGATT
TCAATCAGGAATACAGCGCGCCACAAGCCCCACGCCAGGCTCCGCAAGCCGCACCACAACAAGCCGCTCGCCCGGCAAAA
AGCTTTGATGATTTCGAGGATGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.608
  ssb Glaesserella parasuis strain SC1401

50

100

0.538
  ssb Neisseria meningitidis MC58

50.282

100

0.52
  ssb Neisseria gonorrhoeae MS11

50.282

100

0.52

Multiple sequence alignment