Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACG1BZ_RS02830 Genome accession   NZ_CP172449
Coordinates   632824..633447 (+) Length   207 a.a.
NCBI ID   WP_282934376.1    Uniprot ID   -
Organism   Microbulbifer sp. CNSA002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 627824..638447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG1BZ_RS02820 (ACG1BZ_02820) - 630003..631409 (+) 1407 WP_413664291.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  ACG1BZ_RS02825 (ACG1BZ_02825) - 631500..632651 (+) 1152 WP_413664292.1 MFS transporter -
  ACG1BZ_RS02830 (ACG1BZ_02830) ssb 632824..633447 (+) 624 WP_282934376.1 single-stranded DNA-binding protein Machinery gene
  ACG1BZ_RS02835 (ACG1BZ_02835) - 633463..634311 (+) 849 WP_413664293.1 sugar nucleotide-binding protein -
  ACG1BZ_RS02840 (ACG1BZ_02840) fabB 634371..635594 (-) 1224 WP_413664294.1 beta-ketoacyl-ACP synthase I -
  ACG1BZ_RS02845 (ACG1BZ_02845) fabA 635662..636186 (-) 525 WP_108731685.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  ACG1BZ_RS02850 (ACG1BZ_02850) galU 636505..637356 (+) 852 WP_413664295.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21976.09 Da        Isoelectric Point: 4.9930

>NTDB_id=1067890 ACG1BZ_RS02830 WP_282934376.1 632824..633447(+) (ssb) [Microbulbifer sp. CNSA002]
MARGINKVILIGNLGNDPETKYMPSGGAVTNISLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGAKVYVE
GSLRTRKWQDKNSGQDRYTTEIVASEMQMLDGRGEQGGFGQGMGGAGMGAAAGGQMGGGQPMGGSSGFDQQGGGFQGGYQ
QQGGQEAYGQGRTAPSPMAPANQQPQQQPNQGPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1067890 ACG1BZ_RS02830 WP_282934376.1 632824..633447(+) (ssb) [Microbulbifer sp. CNSA002]
ATGGCCAGGGGTATTAATAAAGTAATTCTGATCGGTAATCTGGGGAATGACCCGGAAACCAAATATATGCCGAGTGGCGG
TGCTGTTACCAACATCAGCCTGGCTACCAGTGAGAGCTGGAAAGACAAGCAGACTGGCCAGCAGCAGGAGCGCACTGAGT
GGCATCGCGTAGTATTTTTTAACCGCCTGGCTGAGATCGCCGGTGAGTACCTGCGCAAGGGGGCCAAAGTTTATGTAGAG
GGCTCTCTACGCACCCGTAAGTGGCAGGATAAGAATTCCGGCCAGGACCGCTACACCACTGAAATCGTTGCCAGCGAAAT
GCAGATGCTGGACGGTCGCGGTGAGCAGGGCGGCTTTGGTCAGGGTATGGGTGGCGCTGGAATGGGCGCAGCCGCAGGTG
GCCAAATGGGTGGCGGCCAGCCGATGGGTGGTTCCAGCGGTTTTGACCAGCAGGGCGGCGGTTTCCAGGGTGGCTACCAG
CAGCAGGGCGGCCAGGAGGCATATGGGCAGGGGCGTACCGCTCCCTCACCGATGGCACCAGCTAACCAGCAGCCCCAGCA
ACAGCCGAACCAAGGTCCTGCCGGTGGTTTCGATAATAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.524

100

0.502
  ssb Glaesserella parasuis strain SC1401

50.98

98.551

0.502
  ssb Neisseria gonorrhoeae MS11

42.453

100

0.435
  ssb Neisseria meningitidis MC58

41.981

100

0.43

Multiple sequence alignment