Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM42_RS02175 Genome accession   NZ_AP028666
Coordinates   469648..470199 (+) Length   183 a.a.
NCBI ID   WP_369630974.1    Uniprot ID   -
Organism   Variovorax sp. V35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 464648..475199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM42_RS02160 (GmRootV35_04260) - 464670..465437 (+) 768 WP_172438465.1 GntR family transcriptional regulator -
  ACAM42_RS02165 (GmRootV35_04270) - 465440..466333 (-) 894 WP_369630973.1 DMT family transporter -
  ACAM42_RS02170 (GmRootV35_04280) uvrA 466380..469409 (-) 3030 WP_235926913.1 excinuclease ABC subunit UvrA -
  ACAM42_RS02175 (GmRootV35_04290) ssb 469648..470199 (+) 552 WP_369630974.1 single-stranded DNA-binding protein Machinery gene
  ACAM42_RS02180 (GmRootV35_04300) - 470688..471887 (+) 1200 WP_369630975.1 pyridoxal phosphate-dependent aminotransferase -
  ACAM42_RS02185 (GmRootV35_04310) - 471895..472665 (+) 771 WP_369630976.1 2-keto-4-pentenoate hydratase -
  ACAM42_RS02190 (GmRootV35_04320) - 472680..473459 (+) 780 WP_369630977.1 SDR family oxidoreductase -
  ACAM42_RS02195 (GmRootV35_04330) - 473526..474281 (+) 756 WP_095950735.1 ABC transporter ATP-binding protein -
  ACAM42_RS02200 (GmRootV35_04340) - 474315..475103 (+) 789 WP_095950686.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19326.23 Da        Isoelectric Point: 5.9505

>NTDB_id=106783 ACAM42_RS02175 WP_369630974.1 469648..470199(+) (ssb) [Variovorax sp. V35]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGGYSQGGGGGGGYSQGGGGGGGYAPRAPAAAPRAPA
PAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=106783 ACAM42_RS02175 WP_369630974.1 469648..470199(+) (ssb) [Variovorax sp. V35]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACATTCCCGAGCGGCGATCA
GGTCGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGTGAGATGCGCGAGGCCACCGAATGGC
ACCGCATCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
TCGCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAAAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGTCCGAGCGACGACGACGGCGGCTACTCGCAAGGCGGGGGCGGCG
GCGGTGGTTACTCGCAAGGTGGTGGCGGCGGTGGCGGCTACGCCCCGCGTGCTCCCGCAGCCGCACCGCGTGCCCCGGCA
CCGGCGCCGCGTCAGGCGCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.85

100

0.557
  ssb Vibrio cholerae strain A1552

47.09

100

0.486
  ssb Neisseria gonorrhoeae MS11

45.856

98.907

0.454
  ssb Neisseria meningitidis MC58

44.751

98.907

0.443

Multiple sequence alignment