Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM55_RS22610 Genome accession   NZ_AP028664
Coordinates   4786211..4786762 (-) Length   183 a.a.
NCBI ID   WP_369653664.1    Uniprot ID   -
Organism   Variovorax sp. V213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4781211..4791762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM55_RS22590 (GmRootV213_44710) - 4781685..4782065 (-) 381 WP_369653661.1 helicase SNF2 -
  ACAM55_RS22595 (GmRootV213_44720) - 4782331..4783161 (-) 831 WP_369653662.1 isocitrate lyase/phosphoenolpyruvate mutase family protein -
  ACAM55_RS22600 (GmRootV213_44730) - 4783379..4784092 (+) 714 WP_369653663.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACAM55_RS22605 (GmRootV213_44740) - 4784103..4785977 (-) 1875 WP_369656460.1 ATP-binding protein -
  ACAM55_RS22610 (GmRootV213_44750) ssb 4786211..4786762 (-) 552 WP_369653664.1 single-stranded DNA-binding protein Machinery gene
  ACAM55_RS22615 (GmRootV213_44760) - 4786896..4788278 (+) 1383 WP_369653665.1 chloride channel protein -
  ACAM55_RS22620 (GmRootV213_44770) uvrA 4788297..4791377 (+) 3081 WP_369653666.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19312.24 Da        Isoelectric Point: 5.9554

>NTDB_id=106779 ACAM55_RS22610 WP_369653664.1 4786211..4786762(-) (ssb) [Variovorax sp. V213]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGAPSGGPEDDGGYSQGGGGGYSQGAGGGGGGGYAPRAPAAAPRAPA
AAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=106779 ACAM55_RS22610 WP_369653664.1 4786211..4786762(-) (ssb) [Variovorax sp. V213]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGTCGCGATCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAATGGC
ACCGCATCGTTTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGCTCCGTCGGGCGGTCCCGAGGACGACGGCGGCTACTCGCAAGGCGGTGGTGGTG
GCTACTCGCAAGGCGCGGGTGGCGGCGGTGGCGGCGGCTACGCCCCCCGTGCGCCGGCCGCGGCACCCCGTGCTCCGGCG
GCCGCACCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.308

100

0.557
  ssb Vibrio cholerae strain A1552

46.597

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.961

98.907

0.464
  ssb Neisseria meningitidis MC58

44.751

98.907

0.443

Multiple sequence alignment