Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH45O_RS27200 Genome accession   NZ_CP172430
Coordinates   6006500..6007012 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain ZL3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6001500..6012012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH45O_RS27185 (ACH45O_27185) purD 6002345..6003595 (+) 1251 WP_397433295.1 phosphoribosylamine--glycine ligase -
  ACH45O_RS27190 (ACH45O_27190) - 6003648..6005039 (+) 1392 WP_397433298.1 MFS transporter -
  ACH45O_RS27195 (ACH45O_27195) - 6005036..6006427 (+) 1392 WP_397433300.1 amidase -
  ACH45O_RS27200 (ACH45O_27200) ssb 6006500..6007012 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  ACH45O_RS27205 (ACH45O_27205) - 6007022..6008416 (-) 1395 WP_124322534.1 MFS transporter -
  ACH45O_RS27210 (ACH45O_27210) uvrA 6008597..6011431 (+) 2835 WP_397433304.1 excinuclease ABC subunit UvrA -
  ACH45O_RS27215 (ACH45O_27215) bfr 6011525..6011989 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=1067730 ACH45O_RS27200 WP_009045846.1 6006500..6007012(-) (ssb) [Pseudomonas chlororaphis strain ZL3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1067730 ACH45O_RS27200 WP_009045846.1 6006500..6007012(-) (ssb) [Pseudomonas chlororaphis strain ZL3]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGGCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAACCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GATGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment