Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   ACFSN5_RS02790 Genome accession   NZ_CP172427
Coordinates   567202..569433 (+) Length   743 a.a.
NCBI ID   WP_165329185.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 562202..574433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS02765 (ACFSN5_02765) - 562544..563371 (+) 828 WP_165329188.1 DUF6612 family protein -
  ACFSN5_RS02770 (ACFSN5_02770) - 563738..564046 (-) 309 WP_165209253.1 DUF3270 family protein -
  ACFSN5_RS02775 (ACFSN5_02775) - 564251..565180 (+) 930 WP_165329187.1 peptidase U32 family protein -
  ACFSN5_RS02780 (ACFSN5_02780) - 565192..565932 (+) 741 WP_165209259.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ACFSN5_RS02785 (ACFSN5_02785) - 566555..567205 (+) 651 WP_165329186.1 helix-hairpin-helix domain-containing protein -
  ACFSN5_RS02790 (ACFSN5_02790) comEC/celB 567202..569433 (+) 2232 WP_165329185.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFSN5_RS02795 (ACFSN5_02795) - 569550..570461 (+) 912 WP_165329184.1 DUF805 domain-containing protein -
  ACFSN5_RS02800 (ACFSN5_02800) - 570535..571218 (+) 684 WP_165329183.1 DUF805 domain-containing protein -
  ACFSN5_RS02805 (ACFSN5_02805) holA 571310..572350 (+) 1041 WP_165329182.1 DNA polymerase III subunit delta -
  ACFSN5_RS02810 (ACFSN5_02810) sodA 572518..573126 (+) 609 WP_165209274.1 superoxide dismutase SodA -
  ACFSN5_RS02815 (ACFSN5_02815) - 573310..574356 (+) 1047 WP_165329181.1 serine hydrolase -

Sequence


Protein


Download         Length: 743 a.a.        Molecular weight: 84874.39 Da        Isoelectric Point: 9.8722

>NTDB_id=1067663 ACFSN5_RS02790 WP_165329185.1 567202..569433(+) (comEC/celB) [Streptococcus sp. ZJ 1593]
MTKYVPIRPIYLAFLLVLLTYFIYSYYWLVGVILAFTLFQLWRHHGLKISVQVLLILLVFGLVFFAYQAKGNYDDKSAPS
QLQELRMIPDTISVNGDQLSFRARSQGRIYQVFYRLKTPKEKQFYQNVTVELDLVVSAKLIKAQPQRNFHGFNYRAYLKH
ERIYRLVAIEKIKSLEPAKRLSLLDHLHILRRQALVNCQQNFPSPMNHYMTGLLFGYLGKDFSEMGDIYTGLGIIHLFAL
SGMQVDFFIGFYRKFLLRLGVRRDWVDILQVPFSIFYAGMTGYAPSVLRSLLQSFWRNFGLQRLDNLAFSMFCMFLLRPN
FLLTTGGLLSFVYAFILAVVDFKDLGRSAAALVQGVSLALGAFPILAYLFGIFQPLSIFLTFGFSLIFDYLMLPFLSLAF
LLSPLVKLTWVNPVFILLEKTVIWTHNFIGRPPVCGSPSLTILLIMLVLLAFLYDYWTQKKIRYLLIFLFLTLACLVKHP
LTNEVTVLDVGQGDSIFLRDSWGKTVLIDTGGRVSFGQEEAWQKENTDSNADRTVIPYLNSRGVGKIDQLILTHTDTDHI
GDLEAVARHFKIGEILVSRGSLTRPSFVKRLKVLKVKVRTVEAGDNLAIMGSWLHVLYPKTIGDGGNNDSLVLYGHLLNK
NFLFTGDLEKEGEEDLLRSYPDLRVDILKAGHHGSKGSSSPDFLMGIKPEAALISAGQNNRYGHPNRETLERFRSQNMAV
YRTDQVGAISYRGLWKWHLETVR

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=1067663 ACFSN5_RS02790 WP_165329185.1 567202..569433(+) (comEC/celB) [Streptococcus sp. ZJ 1593]
ATGACTAAGTATGTCCCAATCAGGCCAATTTACTTGGCTTTTTTGCTAGTTTTGCTAACTTATTTTATTTACTCTTACTA
TTGGTTGGTTGGAGTGATTTTGGCTTTTACACTCTTTCAGCTTTGGCGTCATCATGGCTTAAAAATAAGTGTTCAGGTTT
TACTGATATTATTAGTGTTTGGTCTGGTATTTTTTGCCTATCAAGCTAAAGGGAATTATGATGATAAATCTGCTCCGAGT
CAGCTTCAAGAATTAAGAATGATTCCAGATACTATCTCTGTTAATGGCGATCAGCTCAGTTTTCGGGCCAGAAGTCAAGG
ACGAATCTACCAGGTTTTTTACCGCCTGAAAACACCGAAAGAAAAGCAGTTTTATCAAAATGTGACAGTTGAGCTTGATT
TGGTAGTCTCGGCTAAACTAATAAAGGCTCAACCCCAGCGAAATTTCCATGGTTTTAACTATCGGGCCTATCTCAAACAC
GAGCGAATCTATCGACTGGTAGCTATTGAAAAAATTAAGTCTTTGGAACCAGCTAAACGACTTTCCTTACTTGATCACCT
GCATATTCTAAGACGGCAGGCTCTGGTTAATTGCCAGCAGAACTTTCCAAGTCCTATGAACCACTACATGACTGGACTCC
TCTTTGGCTATCTGGGGAAGGATTTTTCTGAGATGGGAGATATCTACACTGGCCTCGGCATTATTCATCTCTTTGCTCTA
TCGGGTATGCAGGTTGATTTTTTTATTGGATTTTACAGGAAATTTCTCTTACGTTTAGGAGTGAGGCGAGACTGGGTGGA
TATCCTTCAGGTTCCCTTCTCTATCTTCTATGCAGGGATGACGGGTTATGCCCCATCAGTCCTTAGGAGCTTACTCCAGT
CTTTTTGGAGAAATTTTGGTTTGCAACGACTGGATAATCTAGCTTTTAGTATGTTTTGTATGTTTTTACTAAGGCCAAAT
TTTCTGCTGACAACCGGCGGTCTGCTTAGCTTTGTCTACGCTTTTATTCTAGCTGTTGTAGATTTTAAAGATCTAGGTAG
AAGTGCAGCTGCGTTGGTCCAAGGGGTTAGCTTGGCTTTAGGGGCTTTTCCTATACTTGCCTATTTATTTGGTATTTTCC
AGCCATTGTCTATTTTTTTGACCTTCGGTTTTTCGCTTATTTTTGATTATCTTATGCTGCCTTTTTTGAGCTTGGCTTTT
TTGCTAAGTCCTCTGGTTAAGCTGACCTGGGTGAATCCCGTTTTCATCTTGCTTGAGAAGACGGTCATTTGGACTCATAA
TTTTATCGGTCGTCCGCCTGTCTGCGGCAGTCCTAGTTTGACCATCTTATTAATTATGCTAGTCTTATTAGCTTTTCTCT
ATGATTATTGGACGCAAAAGAAGATTCGCTATCTACTCATTTTTCTTTTCCTGACTTTAGCCTGTTTGGTTAAGCATCCC
TTGACCAATGAGGTGACGGTGCTTGATGTTGGTCAGGGAGACAGTATTTTTCTGAGAGATAGTTGGGGAAAGACAGTATT
AATCGATACGGGCGGTCGAGTATCTTTTGGGCAGGAAGAGGCCTGGCAAAAGGAGAATACGGATAGCAATGCCGATAGGA
CGGTCATTCCTTACCTCAATAGCCGTGGCGTGGGGAAAATAGATCAGCTGATTCTAACGCATACTGACACCGATCATATT
GGTGACTTGGAAGCTGTAGCTCGACACTTTAAAATTGGCGAGATTTTGGTTAGTCGAGGAAGTTTGACTAGGCCTTCCTT
TGTCAAGAGACTCAAGGTACTGAAAGTCAAAGTGAGAACAGTGGAGGCAGGAGACAATTTAGCCATTATGGGCAGTTGGC
TTCATGTCCTCTATCCTAAAACGATCGGTGATGGTGGCAATAATGACTCTCTAGTTCTCTATGGCCATTTGCTAAATAAG
AATTTTCTCTTTACTGGAGATCTTGAGAAAGAAGGGGAGGAAGACTTATTACGAAGCTATCCTGATCTCCGTGTTGACAT
TCTCAAAGCAGGTCATCATGGTTCTAAAGGATCGTCCAGTCCAGATTTTTTAATGGGGATAAAACCGGAGGCGGCCTTGA
TTTCAGCAGGACAAAATAATCGCTACGGCCATCCTAATAGGGAAACTTTAGAGCGTTTCAGGTCTCAGAATATGGCTGTT
TATCGGACAGATCAAGTAGGGGCAATTTCCTATCGTGGTTTGTGGAAGTGGCATCTTGAAACTGTCCGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

48.183

100

0.482

  comEC/celB Streptococcus mitis NCTC 12261

48.043

99.731

0.479

  comEC/celB Streptococcus pneumoniae Rx1

47.035

99.865

0.47

  comEC/celB Streptococcus pneumoniae D39

47.035

99.865

0.47

  comEC/celB Streptococcus pneumoniae R6

47.035

99.865

0.47

  comEC/celB Streptococcus pneumoniae TIGR4

47.035

99.865

0.47

  comEC Lactococcus lactis subsp. cremoris KW2

46.143

99.462

0.459


Multiple sequence alignment