Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACHGMI_RS24540 Genome accession   NZ_CP172417
Coordinates   4504737..4505255 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain AKPS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4499737..4510255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS24520 yyzM 4500811..4501017 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  ACHGMI_RS24525 yyaE 4501068..4503071 (+) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  ACHGMI_RS24530 ychF 4503198..4504298 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACHGMI_RS24535 rpsF 4504409..4504696 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  ACHGMI_RS24540 ssbA 4504737..4505255 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACHGMI_RS24545 rpsR 4505299..4505538 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACHGMI_RS24550 xth 4505601..4506356 (+) 756 WP_017695816.1 exodeoxyribonuclease III -
  ACHGMI_RS24555 ccpB 4506416..4507351 (+) 936 WP_017695815.1 transcriptional regulator CcpB -
  ACHGMI_RS24560 yyaH 4507407..4507787 (+) 381 WP_015250784.1 VOC family protein -
  ACHGMI_RS24565 maa 4507803..4508357 (+) 555 WP_017695814.1 sugar O-acetyltransferase -
  ACHGMI_RS24570 yyaJ 4508391..4509748 (-) 1358 Protein_4793 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1067629 ACHGMI_RS24540 WP_003219228.1 4504737..4505255(+) (ssbA) [Bacillus subtilis strain AKPS2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1067629 ACHGMI_RS24540 WP_003219228.1 4504737..4505255(+) (ssbA) [Bacillus subtilis strain AKPS2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment