Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM52_RS26345 Genome accession   NZ_AP028663
Coordinates   5681025..5681573 (-) Length   182 a.a.
NCBI ID   WP_369645000.1    Uniprot ID   -
Organism   Variovorax sp. V118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5676025..5686573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM52_RS26320 (GmRootV118_52240) - 5676138..5676926 (-) 789 WP_369644996.1 transporter substrate-binding domain-containing protein -
  ACAM52_RS26325 (GmRootV118_52250) - 5676960..5677715 (-) 756 WP_369647784.1 ABC transporter ATP-binding protein -
  ACAM52_RS26330 (GmRootV118_52260) - 5677782..5678561 (-) 780 WP_369644997.1 SDR family oxidoreductase -
  ACAM52_RS26335 (GmRootV118_52270) - 5678576..5679346 (-) 771 WP_369644998.1 2-keto-4-pentenoate hydratase -
  ACAM52_RS26340 (GmRootV118_52280) - 5679354..5680553 (-) 1200 WP_369644999.1 pyridoxal phosphate-dependent aminotransferase -
  ACAM52_RS26345 (GmRootV118_52290) ssb 5681025..5681573 (-) 549 WP_369645000.1 single-stranded DNA-binding protein Machinery gene
  ACAM52_RS26350 (GmRootV118_52300) uvrA 5681812..5684841 (+) 3030 WP_235926913.1 excinuclease ABC subunit UvrA -
  ACAM52_RS26355 (GmRootV118_52310) - 5684888..5685796 (+) 909 WP_369645001.1 DMT family transporter -
  ACAM52_RS26360 (GmRootV118_52320) - 5685799..5686566 (-) 768 WP_172438465.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19269.18 Da        Isoelectric Point: 5.9505

>NTDB_id=106755 ACAM52_RS26345 WP_369645000.1 5681025..5681573(-) (ssb) [Variovorax sp. V118]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGGYSQGGGGGGGYSQGGGGGGYAPRAPAAAPRAPAP
APRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=106755 ACAM52_RS26345 WP_369645000.1 5681025..5681573(-) (ssb) [Variovorax sp. V118]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACATTCCCGAGCGGCGATCA
GGTCGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGTGAGATGCGCGAAGCCACTGAATGGC
ACCGCATCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGT
TCGCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGTCCGAGCGACGACGACGGCGGCTACTCGCAAGGCGGGGGCGGCG
GCGGTGGTTACTCGCAAGGTGGTGGTGGTGGCGGCTACGCCCCGCGTGCTCCCGCAGCCGCACCGCGTGCCCCGGCACCG
GCGCCGCGCCAGGCGCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.191

100

0.549
  ssb Vibrio cholerae strain A1552

47.34

100

0.489
  ssb Neisseria gonorrhoeae MS11

45.856

99.451

0.456
  ssb Neisseria meningitidis MC58

41.885

100

0.44

Multiple sequence alignment