Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACHZDB_RS08890 | Genome accession | NZ_CP172405 |
| Coordinates | 1968507..1969100 (-) | Length | 197 a.a. |
| NCBI ID | WP_005432718.1 | Uniprot ID | A0A812GEL0 |
| Organism | Vibrio campbellii strain LB503 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1963507..1974100
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHZDB_RS08870 (ACHZDB_08870) | aroB | 1964380..1965480 (-) | 1101 | WP_399423788.1 | 3-dehydroquinate synthase | - |
| ACHZDB_RS08875 (ACHZDB_08875) | aroK | 1965512..1966030 (-) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| ACHZDB_RS08880 (ACHZDB_08880) | pilQ | 1966219..1967967 (-) | 1749 | WP_045369316.1 | type IV pilus secretin PilQ | Machinery gene |
| ACHZDB_RS08885 (ACHZDB_08885) | pilP | 1968002..1968517 (-) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| ACHZDB_RS08890 (ACHZDB_08890) | pilO | 1968507..1969100 (-) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACHZDB_RS08895 (ACHZDB_08895) | pilN | 1969093..1969668 (-) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| ACHZDB_RS08900 (ACHZDB_08900) | pilM | 1969652..1970668 (-) | 1017 | WP_167425522.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACHZDB_RS08905 (ACHZDB_08905) | - | 1970847..1973414 (+) | 2568 | WP_038889585.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23002.49 Da Isoelectric Point: 4.8135
>NTDB_id=1067446 ACHZDB_RS08890 WP_005432718.1 1968507..1969100(-) (pilO) [Vibrio campbellii strain LB503]
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
Nucleotide
Download Length: 594 bp
>NTDB_id=1067446 ACHZDB_RS08890 WP_005432718.1 1968507..1969100(-) (pilO) [Vibrio campbellii strain LB503]
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAATGGCCGCTGGTACCTCAGTTGGTAGCGATTCTTCTTAT
GGTAGTGTTGATTCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCTGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CGCTCAATATTGAGCTAACGGGTGACTTCCATGACATCGGTCGCTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAAAAAGATGCGAAATAA
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAATGGCCGCTGGTACCTCAGTTGGTAGCGATTCTTCTTAT
GGTAGTGTTGATTCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCTGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CGCTCAATATTGAGCTAACGGGTGACTTCCATGACATCGGTCGCTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAAAAAGATGCGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
99.474 |
96.447 |
0.959 |
| pilO | Vibrio cholerae strain A1552 |
72.251 |
96.954 |
0.701 |