Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | ACHZDB_RS08885 | Genome accession | NZ_CP172405 |
| Coordinates | 1968002..1968517 (-) | Length | 171 a.a. |
| NCBI ID | WP_005432702.1 | Uniprot ID | A0A812GNS1 |
| Organism | Vibrio campbellii strain LB503 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1963002..1973517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHZDB_RS08870 (ACHZDB_08870) | aroB | 1964380..1965480 (-) | 1101 | WP_399423788.1 | 3-dehydroquinate synthase | - |
| ACHZDB_RS08875 (ACHZDB_08875) | aroK | 1965512..1966030 (-) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| ACHZDB_RS08880 (ACHZDB_08880) | pilQ | 1966219..1967967 (-) | 1749 | WP_045369316.1 | type IV pilus secretin PilQ | Machinery gene |
| ACHZDB_RS08885 (ACHZDB_08885) | pilP | 1968002..1968517 (-) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| ACHZDB_RS08890 (ACHZDB_08890) | pilO | 1968507..1969100 (-) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACHZDB_RS08895 (ACHZDB_08895) | pilN | 1969093..1969668 (-) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| ACHZDB_RS08900 (ACHZDB_08900) | pilM | 1969652..1970668 (-) | 1017 | WP_167425522.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACHZDB_RS08905 (ACHZDB_08905) | - | 1970847..1973414 (+) | 2568 | WP_038889585.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19138.23 Da Isoelectric Point: 10.1761
>NTDB_id=1067445 ACHZDB_RS08885 WP_005432702.1 1968002..1968517(-) (pilP) [Vibrio campbellii strain LB503]
MRNKSLLMVCMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEILRAPFELPKEATIATQPVARQD
CWQPPSRKRTGKLERFPLNQLRLKGVMGMGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLMVCMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEILRAPFELPKEATIATQPVARQD
CWQPPSRKRTGKLERFPLNQLRLKGVMGMGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=1067445 ACHZDB_RS08885 WP_005432702.1 1968002..1968517(-) (pilP) [Vibrio campbellii strain LB503]
ATGCGAAATAAATCTTTGCTGATGGTGTGTATGGTGAGTCTGCTGAGTGGTTGCCAAGCCAATGATGAATCACTAACCGA
CTTTATTCGCGGTGTAGAAAACCAAGCACGCCGTGATGTCGCCAAACTCCAGCCGACTGAAGAATATGTAGTGGTGAGTT
ACGAGCCTGAAATTTTGCGTGCTCCTTTTGAACTGCCAAAAGAGGCCACCATCGCAACTCAACCTGTTGCGAGGCAAGAC
TGTTGGCAACCGCCGTCAAGAAAGCGCACTGGCAAACTGGAACGTTTCCCACTTAACCAACTTCGCCTTAAGGGTGTGAT
GGGAATGGGCAGCAGCGTCTCGGGTTTGGTTCAAGCTCCGAATGGCACAGTTTACAAAGTGAAGCCAGGTCAATACCTCG
GACGTAACAATGGCAAGGTAACCCATGTATCCCACAGCTATTTATTGATTAATGAAACCTTGCCAGACGGTTTAGGTTGT
TGGCAAAAGCGCAAAGTGAAGTTGGCGTTGAGATAG
ATGCGAAATAAATCTTTGCTGATGGTGTGTATGGTGAGTCTGCTGAGTGGTTGCCAAGCCAATGATGAATCACTAACCGA
CTTTATTCGCGGTGTAGAAAACCAAGCACGCCGTGATGTCGCCAAACTCCAGCCGACTGAAGAATATGTAGTGGTGAGTT
ACGAGCCTGAAATTTTGCGTGCTCCTTTTGAACTGCCAAAAGAGGCCACCATCGCAACTCAACCTGTTGCGAGGCAAGAC
TGTTGGCAACCGCCGTCAAGAAAGCGCACTGGCAAACTGGAACGTTTCCCACTTAACCAACTTCGCCTTAAGGGTGTGAT
GGGAATGGGCAGCAGCGTCTCGGGTTTGGTTCAAGCTCCGAATGGCACAGTTTACAAAGTGAAGCCAGGTCAATACCTCG
GACGTAACAATGGCAAGGTAACCCATGTATCCCACAGCTATTTATTGATTAATGAAACCTTGCCAGACGGTTTAGGTTGT
TGGCAAAAGCGCAAAGTGAAGTTGGCGTTGAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
99.415 |
100 |
0.994 |
| pilP | Vibrio cholerae strain A1552 |
56.395 |
100 |
0.567 |