Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM58_RS02535 Genome accession   NZ_AP028661
Coordinates   542783..543337 (+) Length   184 a.a.
NCBI ID   WP_012745542.1    Uniprot ID   -
Organism   Variovorax sp. V116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 537783..548337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM58_RS02520 (GmRootV116_05050) - 537784..538521 (+) 738 WP_225612860.1 GntR family transcriptional regulator -
  ACAM58_RS02525 (GmRootV116_05060) - 538530..539426 (-) 897 WP_369664053.1 DMT family transporter -
  ACAM58_RS02530 (GmRootV116_05070) uvrA 539477..542620 (-) 3144 WP_012745541.1 excinuclease ABC subunit UvrA -
  ACAM58_RS02535 (GmRootV116_05080) ssb 542783..543337 (+) 555 WP_012745542.1 single-stranded DNA-binding protein Machinery gene
  ACAM58_RS02540 (GmRootV116_05090) - 543396..545369 (+) 1974 WP_369664054.1 sensor histidine kinase -
  ACAM58_RS02545 (GmRootV116_05100) - 545382..545822 (-) 441 WP_018903958.1 GFA family protein -
  ACAM58_RS02550 (GmRootV116_05110) - 545841..546554 (-) 714 WP_012745545.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACAM58_RS02555 (GmRootV116_05120) - 546910..547290 (+) 381 WP_012745546.1 hypothetical protein -
  ACAM58_RS02560 (GmRootV116_05130) - 547347..547640 (+) 294 WP_307592979.1 hypothetical protein -
  ACAM58_RS02565 (GmRootV116_05140) - 547652..548251 (+) 600 WP_369664055.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19381.31 Da        Isoelectric Point: 5.9554

>NTDB_id=106732 ACAM58_RS02535 WP_012745542.1 542783..543337(+) (ssb) [Variovorax sp. V116]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGAGGGGGGGYAPRAPAAAPRAP
APAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=106732 ACAM58_RS02535 WP_012745542.1 542783..543337(+) (ssb) [Variovorax sp. V116]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAGAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCCTCGGGCGGTCCCGAGGACGACGGCGGCTATTCGCAGGGCGGCGGTGGCG
GCGGCTACTCGCAAGGCGCCGGCGGTGGCGGCGGCGGCGGCTATGCCCCCCGCGCACCGGCCGCGGCACCGCGCGCTCCG
GCGCCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.125

100

0.554
  ssb Vibrio cholerae strain A1552

47.179

100

0.5
  ssb Neisseria gonorrhoeae MS11

46.154

98.913

0.457
  ssb Neisseria meningitidis MC58

44.505

98.913

0.44

Multiple sequence alignment