Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH3PB_RS14580 Genome accession   NZ_CP172312
Coordinates   3254606..3255148 (-) Length   180 a.a.
NCBI ID   WP_416396042.1    Uniprot ID   -
Organism   Allohahella sp. A8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3249606..3260148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH3PB_RS14545 (ACH3PB_14545) - 3250264..3250761 (-) 498 WP_416396028.1 Hsp20 family protein -
  ACH3PB_RS14550 (ACH3PB_14550) - 3251023..3251442 (+) 420 WP_416396030.1 CoA-binding protein -
  ACH3PB_RS14555 (ACH3PB_14555) - 3251447..3251719 (+) 273 WP_416396032.1 Rho termination factor N-terminal domain-containing protein -
  ACH3PB_RS14560 (ACH3PB_14560) mnmH 3251775..3252863 (+) 1089 WP_416396034.1 tRNA 2-selenouridine(34) synthase MnmH -
  ACH3PB_RS14565 (ACH3PB_14565) - 3252831..3253130 (-) 300 WP_416396036.1 AzlD family protein -
  ACH3PB_RS14570 (ACH3PB_14570) - 3253117..3253866 (-) 750 WP_416396038.1 AzlC family ABC transporter permease -
  ACH3PB_RS14575 (ACH3PB_14575) mscL 3254016..3254447 (+) 432 WP_416396040.1 large-conductance mechanosensitive channel protein MscL -
  ACH3PB_RS14580 (ACH3PB_14580) ssb 3254606..3255148 (-) 543 WP_416396042.1 single-stranded DNA-binding protein Machinery gene
  ACH3PB_RS14585 (ACH3PB_14585) - 3255189..3256556 (-) 1368 WP_416396044.1 MFS transporter -
  ACH3PB_RS14590 (ACH3PB_14590) uvrA 3256773..3259622 (+) 2850 WP_416396046.1 excinuclease ABC subunit UvrA -
  ACH3PB_RS14595 (ACH3PB_14595) rplQ 3259730..3260140 (-) 411 WP_416396048.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19352.11 Da        Isoelectric Point: 5.0016

>NTDB_id=1066254 ACH3PB_RS14580 WP_416396042.1 3254606..3255148(-) (ssb) [Allohahella sp. A8]
MARGINKVILIGNLGKDPDTRYLPSGQAVTNLALATDESYKDKQSGEMVSKTEWHRVSMFGRLAEIASQYLKKGSKVYIE
GKLQTRKWQDQSGQDRYSTDIVANEMQMLDSKGMGDSGGSGSSWGDSSPEYSGPQDSQRGGSSAGGYASAGQKSGAQSRP
QPQTASGPDHSDDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1066254 ACH3PB_RS14580 WP_416396042.1 3254606..3255148(-) (ssb) [Allohahella sp. A8]
ATGGCGAGAGGTATAAATAAGGTAATTTTGATCGGTAACCTGGGGAAGGATCCCGACACTCGTTATCTTCCATCGGGGCA
GGCGGTTACCAATCTGGCGCTAGCGACCGATGAGAGCTACAAAGACAAGCAGAGCGGTGAAATGGTCTCCAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGTCGTCTGGCCGAAATTGCCAGCCAGTATCTGAAGAAAGGCAGCAAGGTTTACATCGAA
GGCAAGCTTCAGACTCGTAAGTGGCAGGACCAGAGCGGTCAGGATCGATATTCTACGGATATCGTGGCCAACGAAATGCA
GATGCTCGATAGCAAGGGCATGGGTGACTCTGGTGGGTCAGGCAGTAGCTGGGGTGACTCCAGCCCTGAATATTCCGGCC
CGCAGGACTCGCAACGTGGTGGCTCATCGGCTGGTGGCTATGCTTCTGCCGGTCAGAAGTCTGGCGCACAGAGCAGGCCA
CAGCCACAGACGGCGAGTGGTCCTGATCACAGCGATGACTTTGACGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.337

100

0.533
  ssb Glaesserella parasuis strain SC1401

50.549

100

0.511
  ssb Neisseria meningitidis MC58

46.629

98.889

0.461
  ssb Neisseria gonorrhoeae MS11

46.629

98.889

0.461

Multiple sequence alignment