Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACHZ97_RS16685 Genome accession   NZ_CP172310
Coordinates   3560195..3561253 (-) Length   352 a.a.
NCBI ID   WP_396615791.1    Uniprot ID   -
Organism   Lysobacter soli strain P18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3555195..3566253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZ97_RS16665 (ACHZ97_16665) - 3556248..3558170 (-) 1923 WP_396615787.1 type IV pilus secretin PilQ -
  ACHZ97_RS16670 (ACHZ97_16670) - 3558189..3558740 (-) 552 WP_396615788.1 pilus assembly protein PilP -
  ACHZ97_RS16675 (ACHZ97_16675) - 3558742..3559413 (-) 672 WP_396615789.1 type 4a pilus biogenesis protein PilO -
  ACHZ97_RS16680 (ACHZ97_16680) - 3559410..3560195 (-) 786 WP_396615790.1 PilN domain-containing protein -
  ACHZ97_RS16685 (ACHZ97_16685) pilM 3560195..3561253 (-) 1059 WP_396615791.1 pilus assembly protein PilM Machinery gene
  ACHZ97_RS16690 (ACHZ97_16690) - 3561535..3564027 (+) 2493 WP_396615792.1 penicillin-binding protein 1A -
  ACHZ97_RS16695 (ACHZ97_16695) - 3564251..3564904 (+) 654 WP_192631586.1 hypothetical protein -
  ACHZ97_RS16700 (ACHZ97_16700) - 3564928..3565539 (-) 612 WP_396615793.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37522.89 Da        Isoelectric Point: 4.4951

>NTDB_id=1066225 ACHZ97_RS16685 WP_396615791.1 3560195..3561253(-) (pilM) [Lysobacter soli strain P18]
MGIVTKSQPAVVGVDISSTAVKLLQLSKAGNRYRVEHYAVEPLPPNAVVEKSIVEVEAVGEAIRRAVARSGTRAKHAAAA
VAGSSVITKVIPMPGDLDEDDLESQVELEAVNYVPYPIEEVNHDFEVLGPMPGSPDMLQVLLAASRSENVEVRASALEIG
GLTPKVMDVEAFALENAFALVADQLGGPRDGLVALVDSGATMTTLNVLRNGRSLYAREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEAEVLEPFKEAMVQQISRLLQFFYAGSEFNRVDQIVLAGGCASIAGIAEMVEEQLGVPTTIANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1066225 ACHZ97_RS16685 WP_396615791.1 3560195..3561253(-) (pilM) [Lysobacter soli strain P18]
GTGGGGATCGTCACAAAAAGCCAGCCGGCGGTCGTCGGCGTGGATATCAGTTCGACTGCAGTAAAGCTGTTGCAGCTCTC
CAAGGCCGGCAACCGCTATCGCGTCGAGCATTACGCGGTCGAGCCGCTGCCGCCCAACGCCGTCGTCGAGAAGAGCATCG
TCGAGGTCGAGGCCGTCGGCGAGGCGATCCGTCGCGCCGTCGCGCGTTCGGGCACGCGCGCCAAACATGCTGCCGCCGCG
GTCGCAGGTTCGTCGGTCATCACCAAGGTCATCCCGATGCCGGGCGACCTGGATGAGGACGACCTCGAGTCGCAGGTCGA
GCTGGAGGCGGTGAATTACGTCCCGTATCCGATCGAAGAGGTCAACCACGATTTCGAAGTGCTGGGCCCGATGCCCGGCA
GCCCGGACATGCTGCAGGTGCTGCTTGCGGCGTCGCGTTCGGAGAACGTCGAAGTGCGCGCCTCGGCGCTGGAGATCGGC
GGCCTCACCCCGAAGGTGATGGACGTGGAGGCCTTCGCGCTCGAGAACGCCTTCGCGCTCGTCGCCGACCAGCTCGGCGG
ACCGCGCGACGGCCTCGTCGCACTGGTCGATTCCGGCGCGACGATGACCACGCTCAATGTCCTGCGCAATGGCCGCAGCC
TGTATGCGCGCGAGCAGGTCTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGAGTTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGTCTGCCGGAGAGCTACGAAGCCGAAGTGCTGGAGCCGTTCAAGGAGGCGATGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAACCGCGTCGACCAGATCGTCCTGGCCGGCG
GCTGCGCGTCCATCGCCGGCATCGCCGAGATGGTCGAGGAACAGCTCGGCGTGCCGACCACCATCGCCAACCCGCTGGCG
CACATGACGCTCGGCCCGCGCGTGCAGGCGCATGCGCTGGCGCAGGACGCCCCGGCCCTGATGATCGCCTGCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.43

99.148

0.5
  comM Acinetobacter nosocomialis M2

50.143

99.148

0.497
  comM Acinetobacter baylyi ADP1

49.568

98.58

0.489
  pilM Legionella pneumophila strain ERS1305867

45.349

97.727

0.443

Multiple sequence alignment