Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHZ97_RS15145 Genome accession   NZ_CP172310
Coordinates   3215642..3216145 (-) Length   167 a.a.
NCBI ID   WP_396615592.1    Uniprot ID   -
Organism   Lysobacter soli strain P18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3210642..3221145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZ97_RS15125 (ACHZ97_15125) rfbD 3212182..3213078 (-) 897 WP_396615588.1 dTDP-4-dehydrorhamnose reductase -
  ACHZ97_RS15130 (ACHZ97_15130) rfbC 3213089..3213646 (-) 558 WP_396615589.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  ACHZ97_RS15135 (ACHZ97_15135) rfbA 3213643..3214527 (-) 885 WP_396615590.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACHZ97_RS15140 (ACHZ97_15140) rfbB 3214538..3215590 (-) 1053 WP_396615591.1 dTDP-glucose 4,6-dehydratase -
  ACHZ97_RS15145 (ACHZ97_15145) ssb 3215642..3216145 (-) 504 WP_396615592.1 single-stranded DNA-binding protein Machinery gene
  ACHZ97_RS15150 (ACHZ97_15150) - 3216286..3216600 (-) 315 WP_157030902.1 DUF5076 domain-containing protein -
  ACHZ97_RS15155 (ACHZ97_15155) - 3216600..3216941 (-) 342 WP_396615593.1 hypothetical protein -
  ACHZ97_RS15160 (ACHZ97_15160) - 3217026..3218042 (+) 1017 WP_396615594.1 polyprenyl synthetase family protein -
  ACHZ97_RS15165 (ACHZ97_15165) murD 3218088..3219491 (-) 1404 WP_396617580.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACHZ97_RS15170 (ACHZ97_15170) murL 3219493..3220854 (-) 1362 WP_396615595.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18200.99 Da        Isoelectric Point: 5.9967

>NTDB_id=1066222 ACHZ97_RS15145 WP_396615592.1 3215642..3216145(-) (ssb) [Lysobacter soli strain P18]
MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDRDGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVERYSTDIIADEMQMLGGRPGGEGGGASRSEYRGGGGGERSSRPPARQESAPRREAPPAKSSSFNDDF
ADDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1066222 ACHZ97_RS15145 WP_396615592.1 3215642..3216145(-) (ssb) [Lysobacter soli strain P18]
ATGGCACGCGGCATCAACAAGGTGATCCTGGTCGGCAACCTGGGCGACGATCCCGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTTACCAAGGCCCGCTTGGCGACGACCAGCGTGCGCAAGGACCGCGACGGCAACACCCAGGAGCGCACCGAGTGGC
ACCGGGTGACCTTCTTCGGAAAGCTCGGCGAGATCGCCGGCGAATACCTGCGCAAGGGCAGCCAGGTCTACGTCGAAGGC
TCCATCCGCTACGACAAGTACACCGGCCAGGATGGCGTGGAGCGTTACTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGTCGTCCGGGCGGCGAGGGTGGCGGCGCTAGCCGCAGTGAATACCGCGGCGGTGGCGGTGGCGAGCGTTCGT
CGCGTCCGCCGGCGCGCCAGGAATCGGCCCCGCGTCGCGAGGCGCCCCCGGCCAAGTCGAGCAGCTTCAACGACGACTTC
GCGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.429

100

0.497
  ssb Vibrio cholerae strain A1552

45.81

100

0.491
  ssb Neisseria gonorrhoeae MS11

46.286

100

0.485
  ssb Glaesserella parasuis strain SC1401

40.323

100

0.449

Multiple sequence alignment