Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACF0KO_RS14520 Genome accession   NZ_CP172307
Coordinates   3211129..3211599 (-) Length   156 a.a.
NCBI ID   WP_064030875.1    Uniprot ID   -
Organism   Methylomonas sp. 2B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3206129..3216599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0KO_RS14500 (ACF0KO_14500) - 3206633..3207451 (-) 819 WP_064030872.1 PEP-CTERM sorting domain-containing protein -
  ACF0KO_RS14505 (ACF0KO_14505) - 3208152..3209144 (-) 993 WP_064030873.1 MlaD family protein -
  ACF0KO_RS14510 (ACF0KO_14510) - 3209141..3209932 (-) 792 WP_064030874.1 ABC transporter ATP-binding protein -
  ACF0KO_RS14515 (ACF0KO_14515) - 3209935..3211104 (-) 1170 WP_231883725.1 ABC transporter permease -
  ACF0KO_RS14520 (ACF0KO_14520) ssb 3211129..3211599 (-) 471 WP_064030875.1 single-stranded DNA-binding protein Machinery gene
  ACF0KO_RS14525 (ACF0KO_14525) - 3211631..3213016 (-) 1386 WP_231883726.1 MFS transporter -
  ACF0KO_RS14530 (ACF0KO_14530) - 3213060..3213428 (-) 369 WP_064030877.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17335.05 Da        Isoelectric Point: 5.2691

>NTDB_id=1066201 ACF0KO_RS14520 WP_064030875.1 3211129..3211599(-) (ssb) [Methylomonas sp. 2B]
MLNKVMLIGNLGADPEVRYMPSGDAITTIRLATTRRWKDRNSGDRKEETEWHRVVFFSGLAKTAGEYLKKGSQVYVEGRI
RTQKWQGQDGQDRYTTEIVAESMNMLGSRSGGTANYSDNNTPPPSSYDQRPSAPSSSSGPQSAPASYDDFDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1066201 ACF0KO_RS14520 WP_064030875.1 3211129..3211599(-) (ssb) [Methylomonas sp. 2B]
ATGCTGAATAAAGTCATGCTGATCGGAAATCTCGGGGCCGACCCGGAGGTGCGTTATATGCCGAGCGGCGATGCCATTAC
CACGATACGATTAGCCACCACCCGCCGCTGGAAGGATCGCAATTCCGGCGACCGCAAGGAAGAGACCGAATGGCATCGGG
TCGTGTTCTTCTCCGGCCTGGCAAAAACCGCCGGCGAGTATTTGAAAAAAGGCAGCCAGGTTTATGTCGAGGGCCGGATT
CGTACCCAGAAATGGCAGGGGCAGGACGGCCAGGATCGTTACACCACCGAAATCGTCGCCGAATCGATGAACATGCTCGG
CAGCCGCAGCGGCGGAACCGCTAATTATTCCGATAACAATACGCCGCCGCCGAGCAGTTACGATCAGCGTCCTTCAGCGC
CGTCTTCGTCGTCCGGTCCGCAATCGGCGCCGGCGTCTTACGACGATTTCGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.581

100

0.558
  ssb Neisseria gonorrhoeae MS11

47.701

100

0.532
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.526
  ssb Neisseria meningitidis MC58

47.126

100

0.526

Multiple sequence alignment