Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACF8YQ_RS17445 Genome accession   NZ_CP172297
Coordinates   3757525..3757917 (+) Length   130 a.a.
NCBI ID   WP_011787170.1    Uniprot ID   -
Organism   Marinobacter sp. W-8     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3752525..3762917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8YQ_RS17415 - 3752807..3753817 (-) 1011 WP_396622138.1 aspartate carbamoyltransferase catalytic subunit -
  ACF8YQ_RS17420 pyrR 3753845..3754354 (-) 510 WP_011787165.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACF8YQ_RS17425 ruvX 3754374..3754805 (-) 432 WP_031210066.1 Holliday junction resolvase RuvX -
  ACF8YQ_RS17430 - 3754798..3755364 (-) 567 WP_011787167.1 YqgE/AlgH family protein -
  ACF8YQ_RS17435 - 3755361..3756227 (-) 867 WP_396622139.1 TonB family protein -
  ACF8YQ_RS17440 gshB 3756274..3757227 (-) 954 WP_011787169.1 glutathione synthase -
  ACF8YQ_RS17445 pilG 3757525..3757917 (+) 393 WP_011787170.1 twitching motility response regulator PilG Regulator
  ACF8YQ_RS17450 pilH 3757951..3758313 (+) 363 WP_011787171.1 twitching motility response regulator PilH -
  ACF8YQ_RS17455 - 3758334..3758879 (+) 546 WP_224850813.1 chemotaxis protein CheW -
  ACF8YQ_RS17460 - 3758973..3761048 (+) 2076 WP_011787173.1 methyl-accepting chemotaxis protein -
  ACF8YQ_RS17465 - 3761076..3761975 (+) 900 WP_011787174.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14627.92 Da        Isoelectric Point: 5.2241

>NTDB_id=1066092 ACF8YQ_RS17445 WP_011787170.1 3757525..3757917(+) (pilG) [Marinobacter sp. W-8]
MDDNFENLKIMVIDDSKTIRRTAETLLKKVGCEVITATDGFDALAKIADSQPDIIFVDIMMPRLDGYQTCALIKNNSSFK
KTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKDELLNTIRQYMPQAEQ

Nucleotide


Download         Length: 393 bp        

>NTDB_id=1066092 ACF8YQ_RS17445 WP_011787170.1 3757525..3757917(+) (pilG) [Marinobacter sp. W-8]
ATGGATGACAACTTCGAGAACCTGAAGATCATGGTGATTGACGACAGCAAGACCATTCGTCGCACCGCGGAAACCCTTCT
TAAAAAGGTTGGCTGTGAGGTTATCACTGCCACAGACGGCTTTGACGCTCTGGCCAAGATTGCCGACTCCCAGCCGGACA
TCATTTTTGTCGATATCATGATGCCCCGCCTGGACGGCTACCAGACCTGCGCACTGATCAAGAACAATTCCTCTTTTAAA
AAGACGCCGGTTATCATGCTTTCGAGCAAGGACGGCCTGTTCGACAAGGCAAAAGGCCGAATCGTAGGCTCGGACCAGTA
TCTGACCAAACCGTTCAGCAAGGATGAGCTGCTTAACACCATCCGCCAATACATGCCTCAGGCGGAACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.6

96.154

0.746
  vicR Streptococcus mutans UA159

41.803

93.846

0.392
  micA Streptococcus pneumoniae Cp1015

39.669

93.077

0.369
  pilH Synechocystis sp. PCC 6803

40.517

89.231

0.362

Multiple sequence alignment